Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1624 131 2e-25 seq1209 127 2e-24 >seq1624 Length=1641699 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | || || | ||| |||||||| ||| || ||||| ||||| ||||| Sbjct 1288615 ACAGCCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTC 1288674 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 ||| | |||||| | || || ||||||||||| ||||| ||||| | ||| || || | Sbjct 1288675 GGACAAGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGG 1288734 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||||| || ||||||||| ||| || ||||| | | ||||| || | || Sbjct 1288735 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTC 1288794 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | || || || || || ||||| ||||| ||||||||||||||| Sbjct 1288795 AACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCATG 1288846 Score = 129 bits (142), Expect = 5e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| |||||||| ||| || ||||| ||||| ||||| || |||||||| Sbjct 1288856 AGGCGCAGCACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGT 1288915 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || ||||||||||| || || ||||| | ||| || || | ||||| | ||| Sbjct 1288916 CCGTCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCC 1288975 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | ||||| || | ||| ||||| | || Sbjct 1288976 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTG 1289035 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| ||||||||||||||| Sbjct 1289036 ATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCATG 1289074 Score = 129 bits (142), Expect = 5e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| |||||||| ||| || ||||| ||||| ||||| || |||||||| Sbjct 1289084 AGGCGCAGCACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGT 1289143 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || ||||||||||| || || ||||| | ||| || || | ||||| || ||| Sbjct 1289144 CCGTCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCC 1289203 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | ||||| || | ||| ||||| | || Sbjct 1289204 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTG 1289263 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| || || ||||||||||| Sbjct 1289264 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 1289304 >seq1209 Length=4489628 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||| ||||| ||| |||||||| ||||| ||||| || ||||||||| Sbjct 1333577 AGACGCAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1333518 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||||| || ||| Sbjct 1333517 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 1333458 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | | |||||| || | ||| ||||||| || Sbjct 1333457 TTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCACTGGGCTCAACCTCCAGGGTG 1333398 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| || || |||||||| Sbjct 1333397 ATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 1333360 Score = 123 bits (136), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||| ||||| ||| |||||||| ||||| ||||| || ||||||||| Sbjct 1333805 AGACGCAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1333746 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || |||| |||| || ||| Sbjct 1333745 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCC 1333686 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 |||||| ||| || ||| |||| | || ||||| || | ||| ||||||| Sbjct 1333685 TTGTCCTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAG 1333630 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || ||||| ||||| || || |||||||| Sbjct 1333629 GGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 1333588 Score = 120 bits (132), Expect = 3e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| || || || ||||||||| || || ||||| || ||||||||| Sbjct 1333349 AGACGCAGCACCAAGTGTAGAGTAGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCGC 1333290 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||||| || |||| Sbjct 1333289 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCC 1333230 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | | ||||| || | ||| ||||| | || Sbjct 1333229 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCTAAGGTG 1333170 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 || || || || ||||| ||||| || || |||||||| || || Sbjct 1333169 ATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATTTTCTC 1333126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462216352940400