Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq40351 109 4e-19 seq39000 102 6e-17 >seq40351 Length=29866 Score = 109 bits (120), Expect = 4e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || ||| ||||||| || | |||||||||| |||||||||| || ||||||||||| Sbjct 26697 CTTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGG 26756 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| || || || ||||| |||| |||||||||| ||| Sbjct 26757 AATAGAGAACCAGGTTTTCTTCCCCATTATCAGGGCATTCTGTTTACCTG 26806 >seq39000 Length=16925 Score = 102 bits (112), Expect = 6e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| || || |||||||| || |||||||| ||||| | |||||| | Sbjct 1903 CTTTGTATTCTGCTCCAAAGTGTCTCCACTGGAAACCATACACTGGTCCCAAATCTCCCT 1844 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| | ||||| | ||||| | || | |||||||| |||||||||| Sbjct 1843 CCTCTCTGGTAATGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAA 1784 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181 | | ||| || ||| || ||||||||| Sbjct 1783 TCTTCACACCCTTTGCAGAGAGCTCTTTG 1755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360988386703943