Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq24783 114 2e-20 seq13104 114 2e-20 seq2877 98.7 1e-15 >seq24783 Length=9331 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||||| || | || || ||||| |||||||| ||||||| || | ||| | Sbjct 3475 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCTTCT 3416 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 3415 TCAGCCAAAAAATCGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAG 3356 Query 24277 C 24277 | Sbjct 3355 C 3355 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 23829 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 23888 ||||| |||||||| | || ||||||||||| || || || |||||||| || || ||| Sbjct 4779 GACATGACTCCCATCCTCTGATATTCACCCACTCGCTTCTCAAAAAAATTGGTCTTGCCT 4720 Query 23889 TCTAATGATATATTTTCCATGAAATCGGATGGATT 23923 |||| || || ||||||||||| || | ||||| Sbjct 4719 TCTAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 4685 >seq13104 Length=28606 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 18666 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 18725 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 18726 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 18785 Query 24277 CAATAAGTCTTTCTCC 24292 ||| | ||| || || Sbjct 18786 CAACCACTCTCTCACC 18801 >seq2877 Length=20153 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || ||||| ||||||| ||||||||| || ||||| || ||||| || ||||||| Sbjct 11399 CATACGTCTCGTACGGTCCTTGCTTCTCAGCGAGCTCACAGCTGGCCTCCAAAGCACCGT 11340 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 |||||||||| || || |||| || || | || || || |||| || || || | Sbjct 11339 AATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCGGGGCTTTCGAAGGGGT 11280 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 | | || || || || ||||| | || || ||||| || ||||| || | ||| | Sbjct 11279 ACCGCATCAGGATGAAAGCATCTGCCAGGCCCTGCACACCGATGCCGATGGGACGATGGC 11220 Query 53568 TCTTATTAGAGATTTCAGC 53586 | || ||| |||||| Sbjct 11219 GTCTGTTGGAGCGTTCAGC 11201 Score = 93.3 bits (102), Expect = 5e-14 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 54087 |||||| ||||| ||||||||||||||||| || || | || || ||||||| || || Sbjct 7851 CACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTG 7792 Query 54088 TTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 54146 || || || || |||||||| |||||| || || ||| | | || || | ||||||| Sbjct 7791 CTCTTCCTTCCCAGTATTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAGTGCCACG 7733 Query 54147 GTTCCAAGTATATGGTCATAACTCCAGG 54174 | |||| ||| |||| | | | ||||| Sbjct 7732 GCTCCAGGTAGATGGCAAAAGCCCCAGG 7705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593278587206640