Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq25485 156 5e-33 >seq25485 Length=5583 Score = 156 bits (172), Expect = 5e-33 Identities = 202/277 (73%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||| | || || | |||||||||||||||||||| | |||||||||||| Sbjct 312 GGGCACGCCGTCGGGGCCGACGAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGGCA 253 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 || || |||||| ||| ||| |||| | ||| |||| | ||||||| || Sbjct 252 GACGGGGGACCAGATGATGTACTGCGGGTTGGTCATCAGCGAGGAGGGGTCGTCGTGCGG 193 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACC 83296 ||||| ||||||| ||||||| |||||| || || || |||| | |||| ||| Sbjct 192 GAAGGGCAGCGCCTCTCTCAGGAAGGTGAAGAGGGGGTGCGCGTCCTTCC--CGTTCACC 135 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 | |||||||||||| | || || || |||| | | ||||| ||||| || ||||||| | Sbjct 134 TGGCACTTCTCGAACACGATGAAATTGGGCTTGTACCCGTTGCCAGGCCGAACGTGCTCC 75 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 || || ||| |||||| | ||| || ||||||| Sbjct 74 AGCGAGAGCAGGATCTCCTCGTTCGTAGCATTTTCCT 38 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608342538657720