Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1477 118 9e-22 seq33719 114 1e-20 >seq1477 Length=51144 Score = 118 bits (130), Expect = 9e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||||||||| || ||||| ||||| | |||||| | | || Sbjct 50676 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 50735 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || ||| | |||||||||||| Sbjct 50736 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 50795 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || |||| |||||| || | || |||||| Sbjct 50796 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTC 50855 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 ||||| || | || || ||||| || ||||| ||||| Sbjct 50856 TTGCCTGTCAGGGTCTTCACAAAGATCTGCATGTTGAA 50893 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||| ||||| || ||||| ||||| | |||||| | | || Sbjct 49883 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 49942 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || ||| | |||||||||||| Sbjct 49943 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 50002 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || |||| |||||| || | ||| |||||| Sbjct 50003 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 50062 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 50063 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 50094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||| ||||| || ||||| ||||| | |||||| | | || Sbjct 50111 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 50170 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || || | |||||||||||| Sbjct 50171 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCC 50230 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 |||||| ||||| | | | || |||| |||||| Sbjct 50231 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 50271 >seq33719 Length=2143 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || | ||| | ||||| | ||| | ||||||||||| || ||||| ||||| Sbjct 855 GTTACCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 796 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | |||||| | | || |||||||| ||||| ||| | || || |||||||| || Sbjct 795 GGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGG 736 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 ||| | |||||||||||| |||||| ||||| | | | || |||| |||||| Sbjct 735 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 676 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | || || ||||| || ||||| Sbjct 675 AACCTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 625 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||||||||| || ||||| ||||| | |||||| | | || Sbjct 380 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 321 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || ||| | |||||||||||| Sbjct 320 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 261 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | || |||| |||||| || | ||| |||||| Sbjct 260 TGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 201 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 ||||| || | || || || || || |||||||| Sbjct 200 TTGCCTGTCAGGGTCTTCACGAAGATCTGCATTTT 166 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||| | ||| | | ||| || || || ||||| ||||| | | Sbjct 623 CCACCTCTCAGGCGCAGCACAAGATGGAGGGGGGATTCTTTCTGGATGTTGTAGTCGGAC 564 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||||||| ||||| ||| | || || |||||||| || ||| Sbjct 563 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 504 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | | || |||| |||||| Sbjct 503 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCAACC 444 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || ||||| || ||||| Sbjct 443 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421952002869188