Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq33719 176 5e-39 seq1477 138 1e-27 seq24783 111 2e-19 seq13104 87.8 2e-12 >seq33719 Length=2143 Score = 176 bits (194), Expect = 5e-39 Identities = 181/234 (77%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||||||||| || ||||| || || || || ||||| ||||||||| |||| || || Sbjct 164 GAAAAATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGC 223 Query 40745 CCACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 ||| |||| | | | ||||| |||||| || || | ||||| || ||||| ||| | Sbjct 224 CCAGTGACACCATTGAAAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCT 282 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 || ||||| | || |||| || ||||| |||||||| || | ||||||||| |||| Sbjct 283 GATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGAC 342 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||||| |||| || ||||| ||| ||||| ||||||| ||| Sbjct 343 TACAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGC 396 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| |||| || || ||| Sbjct 397 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 456 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| |||||| || || | ||||| || ||||| ||| | || || Sbjct 457 GACACCATTGAAAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 515 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 516 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 575 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| || || | || ||||| ||| ||||| |||| || ||| Sbjct 576 CATCCAGAAAGAATCCCCCCTCCATCTTGTGCTGCGCCTGAGAGGTGGC 624 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| | || || || ||| Sbjct 625 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTTGAGCCCAGT 684 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || ||||| ||| | || ||| Sbjct 685 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 744 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | ||||||||| |||||||||| Sbjct 745 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 804 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || ||||| ||| ||||| ||||||| || Sbjct 805 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 851 >seq1477 Length=51144 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| |||||||| | || || || || Sbjct 50890 AACATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTTGAGCCC 50831 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || | ||||| || ||||| ||| | || Sbjct 50830 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGAT 50771 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || ||||| |||||||| || | ||||||||| |||||| Sbjct 50770 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 50711 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| |||| || ||||| ||| ||||| ||||||| ||| Sbjct 50710 AACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGC 50660 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 50094 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 50035 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || ||||| ||| | || ||| Sbjct 50034 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 49975 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 49974 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 49915 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| || ||||| ||| ||||| ||||||||||| Sbjct 49914 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGCGGC 49867 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || ||||| || | || ||||| | || |||| || ||||| |||||||| Sbjct 50229 GACAAGGAAGGCATTCCTCCCGATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAA 50170 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| |||||||||||||||||||| |||| || ||||| ||| || Sbjct 50169 GATGGACGCACCCTGTCTGACTACAACATCCAGAAGGAATCCACCCTCCATCTTGTGCTG 50110 Query 40903 CGCTTGAGGGGCGGC 40917 ||| ||||||| ||| Sbjct 50109 CGCCTGAGGGGTGGC 50095 >seq24783 Length=9331 Score = 111 bits (122), Expect = 2e-19 Identities = 93/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| || || |||||||| ||||| | |||||||| || |||| ||| Sbjct 30 GAGCCGCTGCTGCGGGACAATCCCCGCCGCTTCGTCGTCTTCCCCATCCAGTACCATGAC 89 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||||||||| || || ||||| | ||||||||| Sbjct 90 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTTTGGACAGCGGAGGAGGTG 143 >seq13104 Length=28606 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 18791 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 18732 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || ||||||||| ||| || || || ||| | Sbjct 18731 GGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAG 18672 Query 117162 ACGAGG 117167 | |||| Sbjct 18671 ATGAGG 18666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514834762753680