Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq29023 129 1e-24 >seq29023 Length=61511 Score = 129 bits (142), Expect = 1e-24 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 51895 GCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATA 51954 || ||||||| ||| ||| | || ||||| || || || |||||||| ||||||||||| Sbjct 34228 GCTTTATGGTGGTATTATGTTTCTAAAGGAATTGAGTATTTGGATACAGTATTTTTCATC 34169 Query 51955 CTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTT 52014 || ||||| |||||||| || ||||||| || || || ||||| ||||| || ||||| Sbjct 34168 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 34109 Query 52015 ACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 || | | ||||| |||||||| ||| |||| || || || Sbjct 34108 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 34068 Score = 102 bits (112), Expect = 2e-16 Identities = 104/133 (78%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||||||||||||| | ||| | ||||| ||||| |||||||||| |||||||| Sbjct 31888 GCTTTTTTTGGAGCTCAGATGAATGCGTTTATTCATGTCATTATGTACATGTATTATGGG 31829 Query 52117 ATGGCCGCTTGTGGTCCTATGTT-CAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || ||||| |||| || |||||| || || ||||||||||| || | || || Sbjct 31828 TTAGCTGCCTGTGGCCCTAAATTTCAGAAA-TACCTGTGGTGGAAACGATACTTGACCAT 31770 Query 52176 AATGCAGTTGGTA 52188 | |||| ||||| Sbjct 31769 ATTGCAAATGGTA 31757 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| |||||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 31261 GGTGCAGTTCCACGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 31202 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 || |||||||| || ||| || ||| ||||| || | | ||||| || |||||||| Sbjct 31201 CCCTAAATGGATGCACTGGGGTGTAATTTTCTATGCTGTGACCTTCATTTTCCTGTTTGG 31142 Query 52305 TAACTTCTATTTTAGAACATACAA 52328 ||||||||| | | | ||||| || Sbjct 31141 TAACTTCTACTATCGGACATATAA 31118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922507945167720