Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq21261 102 9e-17 seq17851 102 9e-17 seq19648 98.7 1e-15 seq15683 86.0 7e-12 >seq21261 Length=27262 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4941 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5000 Query 60126 TACTACCGAGGATTGA 60141 ||||| ||||||| || Sbjct 5001 TACTAACGAGGATGGA 5016 >seq17851 Length=10662 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 422 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 363 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||| ||| Sbjct 362 TACTAACGAGGAGTGA 347 >seq19648 Length=6050 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/83 (87%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||| | |||| || | ||||||||||||| ||||||||||||||||||||| || Sbjct 5802 AAAAATTGTACCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 5861 Query 60115 ACTCACCACTATACTACCGAGGA 60137 ||| |||||||||||| |||||| Sbjct 5862 ACTTACCACTATACTAACGAGGA 5884 >seq15683 Length=7509 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 42990 CTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCG 43049 ||| | |||||||||||||| |||| ||| || || |||| ||||||||||||||||| Sbjct 348 CTCACTTTTTGAATATTGTAGTCAGACAGCGTGCGTCCGTCTTCTAGCTGCTTACCAGCA 289 Query 43050 AATATGAGTCGCTGCTGGTC 43069 || || ||||||||||| || Sbjct 288 AAAATCAGTCGCTGCTGATC 269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571390931150040