Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq40344 181 7e-41 seq33136 95.1 8e-15 >seq40344 Length=914 Score = 181 bits (200), Expect = 7e-41 Identities = 398/595 (67%), Gaps = 10/595 (2%) Strand=Plus/Plus Query 107820 AAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTC 107879 |||||||||| ||||| | ||||| || |||||| | |||| |||||||||||| Sbjct 326 AAGTCCCCAGCCGCTTTCCAGGAGGCTGTGCGGGCCATCACAGCCTGTTTCCCCAATGTC 385 Query 107880 TTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGAC 107939 || |||| | ||| || || ||||||||||| | |||| |||||| Sbjct 386 TTTGTGGCTAACCGCCTGGAAAAGGGGG------CCTCCTGGTCCCGGCTGCAGGCTGAC 439 Query 107940 CTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACA 107999 || ||||| ||| | ||| |||| |||||| | ||||| ||| ||| | || || || Sbjct 440 CTCAACTGCATGCAGGACCTGCTGCAGAGCCCCGTGCCGTGGCGCTACGTCCTCAACACC 499 Query 108000 TGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTG 108059 || || || || || ||||| |||||||| || ||||| |||| ||||| ||| || || Sbjct 500 TGTGGCACCGATTTTCCCATCAAGACCAACGCTGAGATCGTCCGTGCCCTGAAGGTGCTG 559 Query 108060 AAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAA 108119 |||| ||||||| |||||||| ||| ||| || | ||| | |||||| | Sbjct 560 CAGGGGCAGAACAGCATGGAGTCAGAGAAACCCTCGGCCCTCAAGCGGGAGCGCTGGCAG 619 Query 108120 TACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCT 108179 |||| | | || ||| ||| | | | | || || | ||| | || || || Sbjct 620 TACCACCACGAAGTGGGAGATTCCATCTCTCGGACAGCCACGGAGAAAAAGCCGCCACCC 679 Query 108180 GATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAA 108239 | | | ||||||||||| || || || || |||||| | | || ||||| || || Sbjct 680 CACAGCTCTCCCATGTTCACGGGCAACGCGTACATTGTGGTCACGCGGGCCTTCGTGCAG 739 Query 108240 CATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGC 108299 || ||||| || |||| | || | | || |||| ||| |||||||| ||| Sbjct 740 CACGTCTTTGAGGACCCCACGGTGCAGCAGTTCCTCGAGTGGGCCAAGGACACCTACAGC 799 Query 108300 CCCGACGAACACCTCTGGGCCACCCTTCAGCG--TGCTCCGTGGATGCCTGGCTCTGTTC 108357 || || || || ||||||||||||| | || ||| | ||| |||| ||| | | | Sbjct 800 CCTGATGAGCATGTCTGGGCCACCCTCAACCGTATGCCCGGTG--TGCCAGGCGCCATGC 857 Query 108358 CTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAA 108412 | | ||||| || |||||||||||| ||| | || | || ||||| Sbjct 858 CCCAGAATGACAAGTTCCAGCTCTCAGACATGAACGCCCTGCCCCGCCTGGTCAA 912 >seq33136 Length=22229 Score = 95.1 bits (104), Expect = 8e-15 Identities = 196/287 (68%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || ||||| || || |||| ||||| || | ||| | Sbjct 17670 TTGAGTGGGCAAAAGACACTTACAGCCCAGATGAGTACCTGTGGGCAACAATCCAGAGAA 17611 Query 108334 CTCCGTGGATGCCTGGCT-CTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACT 108392 ||| || | || || | | ||| || | ||||||| | | || ||||||| | Sbjct 17610 -TCCCTGAAGTCCCGGGTGCAGTTTCTTCCAGTGGCAAGTATGATGTTTCTGACATGAAT 17552 Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGA--GGGAGATGTCAGCATGGGGGCGC 108450 || | ||||| | ||||||||||||||| || | || ||||| || || || | Sbjct 17551 GCACTGGCCAGATTTGTCAAGTGGCAGTACTTTGAAGGTGACATGTC--CAAAGGTGCAC 17494 Query 108451 CTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACC 108510 | || |||| ||| |||| | || | | |||| ||| ||||| || |||| Sbjct 17493 CCTACCCACCATGCAGTGGAGTTCACGTTCGCTCTGTCTGTGTTTTTGGGGCAGGAGACC 17434 Query 108511 TGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || |||||||||| | ||||| ||| |||| || || ||||||||| Sbjct 17433 TGAACTGGATTCTACGAAACCACCACTTCTTTGCTAATAAGTTTGAC 17387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348015431509482