Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02]
59,693 sequences; 1,086,566,339 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq33719 102 6e-17
seq1477 91.5 1e-13
>seq33719
Length=2143
Score = 102 bits (112), Expect = 6e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 18132 GATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCA 18191
|||||||| || ||||||||||||| || || | |||||||| || ||||| |||
Sbjct 590 GATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCA 531
Query 18192 TAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACC 18251
|||| || || || ||||| ||| | ||||||||| || || | ||||||
Sbjct 530 AAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACG 471
Query 18252 TGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTT 18311
| | ||| ||||||| |||||| || | ||||||| | ||||| |||| || ||
Sbjct 470 TTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTC 411
Query 18312 ACAAAAATTTGCAT 18325
||||| || |||||
Sbjct 410 ACAAAGATCTGCAT 397
Score = 98.7 bits (108), Expect = 8e-16
Identities = 146/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
|| || || || || || || ||||||||||||| || || | |||||||| ||
Sbjct 371 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGC 312
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
||||| ||| |||| || || || ||||| ||| | ||||||||| || || |
Sbjct 311 TTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 252
Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302
|||||| | | ||| ||||||| |||||| || | ||||||| | ||||| |||
Sbjct 251 GCCTTGACGTTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCTGTC 192
Query 18303 AATGTTTTTACAAAAATTTGCATTTTT 18329
| || || || || || |||||||||
Sbjct 191 AGGGTCTTCACGAAGATCTGCATTTTT 165
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
|| || || || || || || ||||||||||||| || || | |||||||| ||
Sbjct 827 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGC 768
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
||||| ||| |||| || || || ||||| ||| | ||||||||| || || |
Sbjct 767 TTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 708
Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302
||| || | ||| ||||||| |||||| |||| |||||| | ||||| |||
Sbjct 707 GCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTCTTGCCTGTC 648
Query 18303 AATGTTTTTACAAAAATTTGCAT 18325
| || || ||||| || |||||
Sbjct 647 AGGGTCTTCACAAAGATCTGCAT 625
>seq1477
Length=51144
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
|| || || ||||| || || ||||||||||| | || || | |||||||| ||
Sbjct 49892 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGC 49951
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
||||| ||| |||| || || || ||||| ||| | ||||||||| || || |
Sbjct 49952 TTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 50011
Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302
||| || | ||| ||||||| |||||| |||| ||||||| | ||||| |||
Sbjct 50012 GCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTC 50071
Query 18303 AATGTTTTTACAAAAATTTGCAT 18325
| || || ||||| || |||||
Sbjct 50072 AGGGTCTTCACAAAGATCTGCAT 50094
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
|| || || || || || || ||||||||||| | || || | |||||||| ||
Sbjct 50685 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 50744
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
||||| ||| |||| || || || ||||| ||| | ||||||||| || || |
Sbjct 50745 TTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 50804
Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302
||| || | ||| ||||||| |||||| |||| |||||| | ||||| |||
Sbjct 50805 GCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTCTTGCCTGTC 50864
Query 18303 AATGTTTTTACAAAAATTTGCATTTTTAA 18331
| || || ||||| || ||||| || ||
Sbjct 50865 AGGGTCTTCACAAAGATCTGCATGTTGAA 50893
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379068024039285
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |