Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2877 123 2e-23 seq33719 114 1e-20 seq1477 104 2e-17 >seq2877 Length=20153 Score = 123 bits (136), Expect = 2e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 ||||||| |||||| |||||||| || ||||| ||||| |||||||| || || || | Sbjct 9526 CCACCTCATCTTTGCTGGTGTACTCCACGATTTCTGTACACAGATTGCTGCATTTGATGG 9467 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | ||||| || ||| ||||| || || ||||| || || ||||| ||||||||||| | Sbjct 9466 TCCCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTG 9407 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||| ||||| ||| ||||| ||||| || Sbjct 9406 TGCCGGTCTCCGTCTGAGACTCAATGATAGC 9376 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || || |||| || ||||| || ||||| || || |||| || || | ||| | Sbjct 7855 TTTCCACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTC 7796 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 || ||| || || || || ||||| || || || | ||| || || | |||| |||| Sbjct 7795 GCTGCTCTTCCTTCCCAGTATTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAGTGCC 7736 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 ||||||| ||||| | |||||| || || ||||||| || Sbjct 7735 ACGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCTGAT 7697 Score = 86.0 bits (94), Expect = 6e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 23494 CTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCAC 23553 ||| || || || ||||| ||||||||||| |||||||||||||| || |||||||| || Sbjct 7078 CTTGTTACCACCTTGATCCACGTAACGGGCAGTGTTGTTGTACACCCTCAGCATCGGAAC 7019 Query 23554 GAGACCGTTGGA 23565 ||| |||||||| Sbjct 7018 GAGCCCGTTGGA 7007 >seq33719 Length=2143 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| ||||| ||||||||||| || |||||| |||| ||||| || Sbjct 165 AAAAATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCC 224 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||| | |||| ||||| | || ||||||||||||| | || || || Sbjct 225 CAGTGACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGA 284 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||| | || || || |||||||| ||| ||||||| || || ||| || Sbjct 285 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTA 344 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || || || ||||| || || | |||||||| || Sbjct 345 CAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 395 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||||||||| || |||||| |||| ||||| || Sbjct 396 CATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 455 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| ||||| | || ||||||||||||| | || || || || Sbjct 456 TGACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 515 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| ||||||| || || ||| || || Sbjct 516 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 575 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || |||||||| | || ||||| || || | ||||| || || Sbjct 576 CATCCAGAAAGAATCCCCCCTCCATCTTGTGCTGCGCCTGAGAGGTGG 623 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||||||||| || ||||| | || ||||| || Sbjct 624 CATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTTGAGCCCAG 683 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||||| | || || || || Sbjct 684 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 743 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| ||||||| || || ||| || || Sbjct 744 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 803 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || || ||||| || || | |||||||| |||| Sbjct 804 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGTA 853 >seq1477 Length=51144 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||||||||| || |||||| | || ||||| || Sbjct 50095 CATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 50036 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||||| | || || || || Sbjct 50035 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 49976 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | || || || |||||||| ||| ||||||| | | | || || || || | Sbjct 49975 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGCACCCTGTCTGACTACA 49917 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || ||||| || || ||||| || || | ||||||||||| Sbjct 49916 ACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGCGG 49868 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| ||||||||||| || ||||| | || ||||| || Sbjct 50890 AACATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTTGAGCCC 50831 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | || | || || | || ||||||||||||| | || || || Sbjct 50830 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGAT 50771 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || |||||||| ||| ||||||| || || || || Sbjct 50770 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 50711 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || || || ||||| || || | |||||||| || Sbjct 50710 AACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 50661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445433785828560