Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq13104 123 3e-23 seq2877 93.3 5e-14 seq24783 86.0 8e-12 >seq13104 Length=28606 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || || || || ||||| ||||| ||||| | ||| | Sbjct 18666 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 18725 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | ||| || || || ||||||||||| ||||| ||||||||||||| Sbjct 18726 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 18785 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 18786 CAACCACTCTCTCACC 18801 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 33969 TTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 34028 |||||||| || ||||||||||||||||||||||| |||| ||||| ||||| ||| Sbjct 22680 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAACATGAGAGATAAAGTAT 22739 Query 34029 TTTTCGTCTGGTGTTAGTTTATTCCA 34054 ||||| |||| | | || || ||||| Sbjct 22740 TTTTCATCTGCTTTCAGCTTGTTCCA 22765 >seq2877 Length=20153 Score = 93.3 bits (102), Expect = 5e-14 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 63266 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATG 63325 |||||| ||||| ||||||||||||||||| || || | || || ||||| | || || Sbjct 7851 CACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTG 7792 Query 63326 TTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63384 || || || || |||||||| |||||| || || ||| | | || || | ||||||| Sbjct 7791 CTCTTCCTTCCCAGTATTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAGTGCCACG 7733 Query 63385 GTTCCAAGTATATGGCCATAACTCCAGG 63412 | |||| ||| ||||| | | | ||||| Sbjct 7732 GCTCCAGGTAGATGGCAAAAGCCCCAGG 7705 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || || || ||||||| ||||||||| || | ||| || ||||| || ||||||| Sbjct 11399 CATACGTCTCGTACGGTCCTTGCTTCTCAGCGAGCTCACAGCTGGCCTCCAAAGCACCGT 11340 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 |||||||||| ||||| |||| || || | || || || ||||| || || || | Sbjct 11339 AATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCGGGGCTTTCGAAGGGGT 11280 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | || || || || || || | || || ||||| || ||||| || | ||| | Sbjct 11279 ACCGCATCAGGATGAAAGCATCTGCCAGGCCCTGCACACCGATGCCGATGGGACGATGGC 11220 Query 62806 TCTTATTAGAGATTTCAGC 62824 | || ||| |||||| Sbjct 11219 GTCTGTTGGAGCGTTCAGC 11201 >seq24783 Length=9331 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| |||||||| | || ||||||||||| || || || |||||||| || || ||| Sbjct 4779 GACATGACTCCCATCCTCTGATATTCACCCACTCGCTTCTCAAAAAAATTGGTCTTGCCT 4720 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 || | || || ||||||||||| ||||| ||||| Sbjct 4719 TCTAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 4685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629347653725040