Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq13104 120 4e-22 seq24783 114 2e-20 seq25144 109 7e-19 seq2877 98.7 1e-15 >seq13104 Length=28606 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 18666 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 18725 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 18726 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 18785 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 18786 CAACCACTCTCTCACC 18801 >seq24783 Length=9331 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | || || ||||| |||||||| ||||||| || | ||| | Sbjct 3475 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCTTCT 3416 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 3415 TCAGCCAAAAAATCGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAG 3356 Query 36300 C 36300 | Sbjct 3355 C 3355 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/140 (75%), Gaps = 5/140 (4%) Strand=Plus/Minus Query 35811 TTTAAAAATCAACATCTAGAGAAAAATGATTGTCTT----CTTGAGACATAACTCCCATT 35866 ||||||| || ||||||| | ||| |||||| ||| ||||| |||||||| Sbjct 4823 TTTAAAATTCCGCATCTAGGGTGAAAGAGTTGTCTGTGGGCTTC-GACATGACTCCCATC 4765 Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 | || ||||||||||| || || || |||||||| || || ||||||| || || ||| Sbjct 4764 CTCTGATATTCACCCACTCGCTTCTCAAAAAAATTGGTCTTGCCTTCTAGAGAGATGTTT 4705 Query 35927 TCCATGAAATCGAATGGATT 35946 |||||||| || || ||||| Sbjct 4704 TCCATGAAGTCAAAAGGATT 4685 >seq25144 Length=8473 Score = 109 bits (120), Expect = 7e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 9471 ACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTC 9530 |||| | | |||||||||| ||| ||||| ||||||||||| || | ||||| |||||| Sbjct 5900 ACAACCTACCCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGCAAGGTATACGCAGTC 5841 Query 9531 AGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAG 9590 || ||||||| || |||||||| || || || ||||||| |||| |||||||||| Sbjct 5840 AGTCCAAGAAATACAGCAGTAGTAAGAATAAAGGCTTGCAAGACGATGGACACATCATAG 5781 Query 9591 AAA 9593 ||| Sbjct 5780 AAA 5778 >seq2877 Length=20153 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || ||||| ||||||| ||||||||| || ||||| || ||||| || ||||||| Sbjct 11399 CATACGTCTCGTACGGTCCTTGCTTCTCAGCGAGCTCACAGCTGGCCTCCAAAGCACCGT 11340 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 |||||||||| || || |||| || || | || || || |||| || || || | Sbjct 11339 AATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCGGGGCTTTCGAAGGGGT 11280 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | || || || || ||||| | || || ||||| || ||||| || | ||| | Sbjct 11279 ACCGCATCAGGATGAAAGCATCTGCCAGGCCCTGCACACCGATGCCGATGGGACGATGGC 11220 Query 65599 TCTTATTAGAGATTTCAGC 65617 | || ||| |||||| Sbjct 11219 GTCTGTTGGAGCGTTCAGC 11201 Score = 93.3 bits (102), Expect = 6e-14 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 66059 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATG 66118 |||||| ||||| ||||||||||||||||| || || | || | ||||||| || || Sbjct 7851 CACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTG 7792 Query 66119 TTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCCACG 66177 || || || || |||||||| |||||| || || ||| | | || || | ||||||| Sbjct 7791 CTCTTCCTTCCCAGTATTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAGTGCCACG 7733 Query 66178 GTTCCAAGTATATGGCCATAACTCCAGG 66205 | |||| ||| ||||| | | | ||||| Sbjct 7732 GCTCCAGGTAGATGGCAAAAGCCCCAGG 7705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657681696138120