Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2877 87.8 2e-12 seq1477 82.4 8e-11 >seq2877 Length=20153 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/105 (80%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 153684 ACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTT-TGATTGCTTTT 153742 || ||||| | ||||| |||||||||||| || | || ||| | || |||||||| || Sbjct 9500 ACGATTTCTGTACACAGATTGCTGCATTTGATG-GTCCCCAAGTTCTGCTGATTGCTCTT 9442 Query 153743 GCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTC 153787 ||||| |||| ||| ||||| |||||||| ||||||||||| || Sbjct 9441 CCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCGGTCTC 9397 >seq1477 Length=51144 Score = 82.4 bits (90), Expect = 8e-11 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || || || || || ||||| || || || |||| || | ||||| ||||| || || Sbjct 50126 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGCC 50184 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| ||||||| | |||||||||||||| |||||||| ||||| ||| || || Sbjct 50185 AGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 50244 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 | | || | ||||| ||||||| ||||||| ||| Sbjct 50245 CACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGT 50283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495693855645600