Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq13104 107 2e-18 seq24783 98.7 9e-16 >seq13104 Length=28606 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || || || || || || || ||||| || || | || || Sbjct 18668 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 18727 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||||||||||||||| ||||||||||| || || ||||||||||| ||||| || Sbjct 18728 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 18787 Query 13295 ATCAACCTTTCACC 13308 | || || ||||| Sbjct 18788 ACCACTCTCTCACC 18801 >seq24783 Length=9331 Score = 98.7 bits (108), Expect = 9e-16 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || ||||| || ||||| || || || ||||| | |||| || || Sbjct 3473 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCTTCTTC 3414 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||| || | ||||| || || ||||| || |||||||| ||||||||||| ||| Sbjct 3413 AGCCAAAAAATCGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAGCT 3354 Query 13295 ATCA 13298 | || Sbjct 3353 ACCA 3350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430668856667586