Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq39000 109 4e-19 >seq39000 Length=16925 Score = 109 bits (120), Expect = 4e-19 Identities = 127/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| |||||||| || | ||||||||||| || ||||| ||||| | || Sbjct 1908 CATATCTTTGTATTCTGCTCCAAAGTGTCTCCACTGGAAACCATACACTGGTCCCAAATC 1849 Query 25833 TCCATCTTCCCTG-TGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 ||| || || ||| | | ||| ||| |||||||| || || | || ||||| || | Sbjct 1848 TCCCTCCTCTCTGGTAATGAAA-CCCTGCTTATCCAGGAACTCACGTGATCCATTAGCAT 1790 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||| ||||| || ||||| | ||||||||||||| ||||| ||||| Sbjct 1789 CCCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGACCC 1741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339890147026089