Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq11043 147 3e-30 seq13762 125 1e-23 >seq11043 Length=29147 Score = 147 bits (162), Expect = 3e-30 Identities = 220/311 (71%), Gaps = 1/311 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| |||||| | || | || ||| | | ||| Sbjct 5395 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAAATGAGCTTCTGTAAGGAGGCAG 5336 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| || || | ||| || |||||||| || |||||||| | |||| Sbjct 5335 TATTGATTATTTCAAAGCCTACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 5276 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || ||||| || || ||||| || || | ||| | || Sbjct 5275 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 5216 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | ||||| |||||||| || || |||||||| || | | || | ||||| ||||| Sbjct 5215 TTTCACCAAAGATGGCACCTGGTCGCGGCTTTTCTACGAGAAGGCCTGGGTACAGCTCCA 5156 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977 ||| || |||||||| ||||| | ||||| || || ||||| ||||||||||| Sbjct 5155 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 5096 Query 8978 TTATTAATAAA 8988 ||||| || || Sbjct 5095 TTATTGATGAA 5085 Score = 140 bits (154), Expect = 5e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| ||| || || ||||| || || ||| ||| || ||||| || ||||||| Sbjct 3384 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGG 3325 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||||||| ||||| || |||||||||||||| | || || Sbjct 3324 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATCGTAGCGTACATCATTAAGCCTGGG 3265 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || || |||| | ||| | ||| || || | ||||| Sbjct 3264 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAGGTGTTCAGGGACGTGAGGAGGG 3205 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || |||| || ||||||||||| || ||||| ||| Sbjct 3204 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCATCAATCATC 3145 Query 9862 TG 9863 || Sbjct 3144 TG 3143 >seq13762 Length=3515 Score = 125 bits (138), Expect = 1e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| |||||| |||| || |||||||||| || |||||||||||||| | |||| Sbjct 622 TCTTAACGATCTCAAAGCCAGTTGCTCCGCCGAATGTACTGGGTTTCCAGTACTCTGGGG 681 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || ||||||||||| || || | ||| | |||| Sbjct 682 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAACGGCGCTCCGATCTCCACCATGC 741 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || ||| | ||||| |||| || || | || || || | || ||||||| Sbjct 742 TTTCTCCAAAAATGCCATTGGGCTGGGGTTTCTCAAGCAGCAAGCCCGGATAAAACTCCA 801 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| ||||||||||| || || Sbjct 802 GAGCGTCGATGTCTCCATACAG 823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707996125363920