Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq13104 132 6e-26 seq24783 111 2e-19 seq2877 98.7 1e-15 >seq13104 Length=28606 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 18666 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 18725 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||| | ||| || || || ||||||||||| ||||| ||||||||||||| Sbjct 18726 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 18785 Query 33446 CAATAAGTCTCTCTCC 33461 ||| | |||||| || Sbjct 18786 CAACCACTCTCTCACC 18801 >seq24783 Length=9331 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||||| || || || || ||||| |||||||| ||||||| || | ||| | Sbjct 3475 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCTTCT 3416 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | |||||||| || || || || || ||||||||||| |||||||| ||||| ||||| | Sbjct 3415 TCAGCCAAAAAATCGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAG 3356 Query 33446 C 33446 | Sbjct 3355 C 3355 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 ||||| |||||||| | || ||||||||||| || || || |||||||| || || ||| Sbjct 4779 GACATGACTCCCATCCTCTGATATTCACCCACTCGCTTCTCAAAAAAATTGGTCTTGCCT 4720 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33092 || | || || ||||||||||| ||||| ||||| Sbjct 4719 TCTAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 4685 >seq2877 Length=20153 Score = 98.7 bits (108), Expect = 1e-15 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274 |||||| ||||| ||||||||||||||||| || || | || || ||||||| || || Sbjct 7851 CACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTG 7792 Query 63275 TTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63333 || || || || |||||||| |||||| || || ||| | | || || | ||||||| Sbjct 7791 CTCTTCCTTCCCAGTATTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAGTGCCACG 7733 Query 63334 GTTCCAAGTATATGGCCATAACTCCAGG 63361 | |||| ||| ||||| | | | ||||| Sbjct 7732 GCTCCAGGTAGATGGCAAAAGCCCCAGG 7705 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||| || ||||| ||||||| ||||||||| || ||||| || ||||| || ||||||| Sbjct 11399 CATACGTCTCGTACGGTCCTTGCTTCTCAGCGAGCTCACAGCTGGCCTCCAAAGCACCGT 11340 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 |||||||||| || || |||| || || | || || || |||| || || || | Sbjct 11339 AATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCGGGGCTTTCGAAGGGGT 11280 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 | | || || || || || || | || || ||||| || ||||| || | ||| | Sbjct 11279 ACCGCATCAGGATGAAAGCATCTGCCAGGCCCTGCACACCGATGCCGATGGGACGATGGC 11220 Query 62755 TCTTATTAGAGATTTCAGC 62773 | || ||| |||||| Sbjct 11219 GTCTGTTGGAGCGTTCAGC 11201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622482380159880