Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq33719 118 1e-21 seq2877 105 6e-18 seq1477 102 8e-17 >seq33719 Length=2143 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||||| | ||| | ||| |||||||| || |||||||| ||| Sbjct 396 GCCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 337 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| || || ||||||||||| || |||| | | |||||| || || || Sbjct 336 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 277 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | || | || || ||| ||| | Sbjct 276 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCAAC 217 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || || || || ||||| |||||||| Sbjct 216 CTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 169 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||||| | ||| | ||| |||||||| || |||||||| ||| | Sbjct 851 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 792 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| || || ||||||||||| || |||| | | |||||| || || || Sbjct 791 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 732 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 731 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 672 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || || || || || ||||||||| Sbjct 671 TCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 624 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||||| | ||| | || || || || || |||||||| ||| Sbjct 624 GCCACCTCTCAGGCGCAGCACAAGATGGAGGGGGGATTCTTTCTGGATGTTGTAGTCGGA 565 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| || || ||||||||||| || |||| | | |||||| || || || Sbjct 564 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 505 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | || | || || ||| ||| | Sbjct 504 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCAAC 445 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || || || || || || || || ||||||||| Sbjct 444 CTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 396 >seq2877 Length=20153 Score = 105 bits (116), Expect = 6e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||||| || | |||| |||||| ||||||||||| |||| || ||||||| Sbjct 9508 TGTACTCCACGATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGAT 9449 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | || |||| |||||| | ||| ||||| |||||||||||| ||| |||||| ||| | Sbjct 9448 TGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCGGTCTCCGTCTGAG 9389 Query 145788 TCTCCACGATA 145798 ||| | |||| Sbjct 9388 ACTCAATGATA 9378 >seq1477 Length=51144 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||||| | ||| | ||| |||||||| || |||||||| || Sbjct 50660 GCCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 50719 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| || || ||||||||||| || |||| | | |||||| || || || Sbjct 50720 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 50779 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 50780 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 50839 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || || || || || ||||||||| Sbjct 50840 CTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 50888 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 |||| || | || |||||||| | ||| | ||| || ||||| || |||||||| || Sbjct 49866 AGCCGCCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 49925 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || |||||| || || ||||||||||| || |||| | | |||||| || || | Sbjct 49926 ACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 49985 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || ||||| ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 49986 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 50045 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 50046 CCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 50095 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||||| | ||| | ||| || ||||| || |||||||| || Sbjct 50095 GCCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 50154 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| | | |||||| || ||||| Sbjct 50155 CAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 50214 Query 131127 GATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 50215 AATGCCTTCCTTGTC 50229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471660601749120