Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2877 96.9 7e-15 seq13104 93.3 8e-14 >seq2877 Length=20153 Score = 96.9 bits (106), Expect = 7e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||||||||| || || | ||| ||||| ||| ||| || ||||||||| Sbjct 12895 ACCTGAAACTCTCCCGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCGATG 12836 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| | |||||||| ||||| || || |||||| |||||||| || | || || Sbjct 12835 GACTCGTTATTGCCCAGGATCTGAGCAGTCGACGCAGTTGGCATGGGGGAAAGGAGAAGG 12776 Query 244217 CTGTTCCTCACGCCGT 244232 ||||| || ||||||| Sbjct 12775 CTGTTTCTGACGCCGT 12760 Score = 95.1 bits (104), Expect = 2e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || || ||||||||||| ||| ||||| |||| | |||||| || Sbjct 7845 CTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTC 7786 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 | ||||| |||||| | | || | ||| ||||||| ||| | |||||| ||||||| Sbjct 7785 CTTCCCAGTATTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAGTGCCACGGCTCCAG 7726 Query 245128 GTAGA 245132 ||||| Sbjct 7725 GTAGA 7721 Score = 95.1 bits (104), Expect = 2e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTA 244381 || |||||||| || ||||| || ||| ||| || || | || || |||| | Sbjct 11421 CCTTTGCTGACAGGAGACCCCTCATACGTCTCGTACGGTCCTTGCTTCTCAGCGAGCTCA 11362 Query 244382 CAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC-G 244440 ||||| | || | || |||| || |||||||| || ||| || ||||| | ||| | Sbjct 11361 CAGCTGGCCTCCAAAGCACCGTAATAAATGGTCTCAAAAATCTGCTGGTTCAAG-CGCTG 11303 Query 244441 GGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCAC 244500 ||||| | || ||||||| | ||||| ||||| | || ||||| |||||||| Sbjct 11302 GGCCTCGGGGCTTTCGAAGGGGTACCGCATCAGGATGAAAGCATCTGCCAGGCCCTGCAC 11243 Query 244501 GCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536 |||||||||||||| | || || |||||||||| Sbjct 11242 ACCGATGCCGATGGGACGATGGCGTCTGTTGGAGCG 11207 >seq13104 Length=28606 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 18801 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 18742 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||||| || ||||| || ||||| Sbjct 18741 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTT 18682 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 18681 ATTAGCAGAGATGAGG 18666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943634569501680