Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2877 104 2e-17 seq33719 82.4 8e-11 >seq2877 Length=20153 Score = 104 bits (114), Expect = 2e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| |||||| || | || || ||||||||||| ||| ||||| || ||||||| Sbjct 9508 TGTACTCCACGATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGAT 9449 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 |||| || || ||||| | ||||||| | |||||||||||| ||||||||| Sbjct 9448 TGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCGGTCTC 9397 >seq33719 Length=2143 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || |||| || | ||| | | | |||||||| || |||||||||||| Sbjct 396 GCCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 337 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| || || || || || || | | |||| || | ||| || || || || Sbjct 336 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 277 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | ||| | |||||| | | ||| || Sbjct 276 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCAAC 217 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || || ||||| || || || || |||||||| Sbjct 216 CTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495892107606960