Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq11043 161 1e-34 seq13762 120 4e-22 >seq11043 Length=29147 Score = 161 bits (178), Expect = 1e-34 Identities = 181/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| ||||| |||| |||||| ||| |||| ||||| || || ||||| || Sbjct 3384 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGG 3325 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||||| ||||||||| ||||||||||| || |||||||||||||| || || Sbjct 3324 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATCGTAGCGTACATCATTAAGCCTGGG 3265 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||||||||| || | ||| || | ||| |||| | || || || | || | Sbjct 3264 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAGGTGTTCAGGGACGTGAGGAGGG 3205 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| || ||||| | | Sbjct 3204 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCATCAATCATC 3145 Query 9967 TG 9968 || Sbjct 3144 TG 3143 Score = 150 bits (166), Expect = 3e-31 Identities = 211/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||| ||| |||||||| ||| | || || | Sbjct 5395 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAAATGAGCTTCTGTAAGGAGGCAG 5336 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || ||||| | || || |||||||| || ||||||||| | |||| Sbjct 5335 TATTGATTATTTCAAAGCCTACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 5276 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || ||||||| || ||||| || || | ||| | || Sbjct 5275 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 5216 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || ||||| ||||| |||| | ||| | ||| || || | Sbjct 5215 TTTCACCAAAGATGGCACCTGGTCGCGGCTTTTCTACGAGAAGGCCTGGGTACAGCTCCA 5156 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || || || || || || || ||| Sbjct 5155 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 5100 Score = 93.3 bits (102), Expect = 6e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 || || |||||||| | ||| || | | || |||| | ||| ||| | ||| Sbjct 4580 ATAGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCATGTATCTGGAAAGTG 4521 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||| | || | |||||| ||||||| |||||||| || || || |||||||||||| Sbjct 4520 TCAGGTAGAAGTGGGTGCCAGTGGTAGAGAGTATTGAATTCAGCTGCAATTCGGTTCTGG 4461 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || ||||| | |||| ||||||||| | Sbjct 4460 TATTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCAAACTTGAGCTTGAAGTGGTAGC 4403 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | || | || || ||||| | ||| | ||| || || || || || || Sbjct 4402 CACTCAAGTGTTGCACATAGTCCTCGATGACAATCTTGATTGTCTCTCCTGT 4351 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 |||||| || || | || || || |||||| | ||||| || |||||||| ||||| Sbjct 1411 ACCTTTAACACCCATTGGTGTCGGACAGTCAAGTCCTACCGGTGGAAGAGTTCTGGTATA 1352 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 |||||| ||||| ||| | ||||||||||| ||||| |||||| ||||| || Sbjct 1351 ATAGGAGAGATTGGAATAAGCTTCCCAGCTTTTGTAAGTATAATCACTATTGTAAGTTGG 1292 Query 10509 GGGACTGTCAATCATCTCGGACCTGGCT 10536 || |||||||||| | || |||||| Sbjct 1291 CGGGCTGTCAATCAAGTGTGATCTGGCT 1264 Score = 89.7 bits (98), Expect = 7e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| |||| ||||| | ||| | || ||||||||||| || || ||| | Sbjct 554 CTTACGTGTCGTACAGTTTTCCCCGTAATATCCTGTCCGCGTACAGTCACATTCATACTG 495 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 |||||| || ||||||||||| |||| ||||| ||||||| || ||||||||||| Sbjct 494 ATCAAATCCTGTTGTCATGCATACTCCTCTGTTCTGACACGGGTTTGAGCAGCAAGGGTT 435 Query 10960 GGCTGCAAT 10968 ||||| ||| Sbjct 434 GGCTGGAAT 426 >seq13762 Length=3515 Score = 120 bits (132), Expect = 4e-22 Identities = 173/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 ||| || || ||||| || || || | |||||||| || ||||||||||||||| | Sbjct 617 TGCTGTCTTAACGATCTCAAAGCCAGTTGCTCCGCCGAATGTACTGGGTTTCCAGTACTC 676 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 |||||||||||| ||| | | ||||| |||| ||||||||| || || | ||| | Sbjct 677 TGGGGAGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAACGGCGCTCCGATCTCCAC 736 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||||| || || || ||| || ||| | ||||| || | | ||||| | || | Sbjct 737 CATGCTTTCTCCAAAAATGCCATTGGGCTGGGGTTTCTCAAGCAGCAAGCCCGGATAAAA 796 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || | ||| |||| ||| ||||| || |||||| ||| || || |||| | ||| || Sbjct 797 CTCCAGAGCGTCGATGTCTCCATACAGCTCTTCCAGCTCTGCTGCCTTCTCTTCCTCTCC 856 Query 9175 TACA 9178 | || Sbjct 857 TGCA 860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723187981306200