Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq33719 131 2e-25 seq1477 129 7e-25 >seq33719 Length=2143 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | |||| ||| ||||| | || |||||| ||||| |||||||||| Sbjct 397 TGCCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 338 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||||| | || || ||||||||||| || || |||| | |||||| || | | Sbjct 337 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 278 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||||| | | | ||||| || | || | Sbjct 277 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCAA 218 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 | || | |||||||| ||||| ||||| || || || ||||| |||||||| Sbjct 217 CCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATTTT 166 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| ||||| | || |||||| ||||| ||||||||||| || |||||| | Sbjct 839 CGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 780 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| | |||||| || | || | || |||||| Sbjct 779 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTG 720 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | ||||| || | || || || | |||||| Sbjct 719 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATG 660 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| || || |||||||| ||||| Sbjct 659 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 625 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | |||| ||| ||||| | | || || ||||| |||||||||| Sbjct 625 TGCCACCTCTCAGGCGCAGCACAAGATGGAGGGGGGATTCTTTCTGGATGTTGTAGTCGG 566 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||||| | || || ||||||||||| || || |||| | |||||| || | | Sbjct 565 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 506 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||||| | | | ||||| || | || | Sbjct 505 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCAA 446 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 445 CCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 397 >seq1477 Length=51144 Score = 129 bits (142), Expect = 7e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | |||| ||| ||||| | || |||||| ||||| |||||||| | Sbjct 50659 TGCCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 50718 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||||| | || || ||||||||||| || || |||| | |||||| || | | Sbjct 50719 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 50778 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||| | || | | ||||| || | || | Sbjct 50779 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 50838 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCAC 46600 | || | |||||||| ||||| ||||| || || |||||||| ||||| ||| || Sbjct 50839 CCTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATGTTGAAC 50894 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | |||| ||| ||||| | || ||||| ||||| |||||||| || Sbjct 49867 GCCGCCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 49926 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || ||||| | || || ||||||||||| || || |||| | |||||| || | || Sbjct 49927 CAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 49986 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||||||| |||||| ||| | || | | ||||| || | || || Sbjct 49987 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 50046 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 50047 CTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 50094 Score = 86.0 bits (94), Expect = 7e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | |||| ||| ||||| | || ||||| ||||| |||||||| | Sbjct 50094 TGCCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 50153 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | |||||| |||| | Sbjct 50154 ACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAG 50213 Query 46485 GCACGCTCTCCTTGTCCATGATCTT 46509 | | || ||||||||| |||||| Sbjct 50214 GAATGCCTTCCTTGTCCTGGATCTT 50238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564816640302360