Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq47833 113 2e-19 seq38614 93.3 2e-13 >seq47833 Length=2628 Score = 113 bits (124), Expect = 2e-19 Identities = 240/353 (68%), Gaps = 9/353 (3%) Strand=Plus/Plus Query 451259 TCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACT 451318 || ||||| || ||||| |||||||| | || || ||| | || | | || ||| Sbjct 538 TCCATGGTCCTGACTAAGATGAAAGAGATCGCTGAGGCTTATCTGGGG-CGCAAGGTACA 596 Query 451319 GA-TGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGA 451377 || ||| || || || || || ||||| |||||||| | || || || || || ||||| Sbjct 597 GAATGCTGTCATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGA 656 Query 451378 TGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 ||| || ||| |||| | ||||| | || ||||| || || || ||||||||||| Sbjct 657 TGCTGGCACTATCACTGGCCTTAATGTGATGCGTATTATCAACGAGCCCACAGCAGCTGC 716 Query 451438 TCTAGCATATGGACTAGGAAAATCAAAAGAA-----ACAGAAGaaaaaaaTATTTTAGTA 451492 | |||| ||||| || ||| || ||| | | | | ||| || ||| | | | Sbjct 717 TATAGCCTATGG-CTTGGACAA-GAAAGGTACCCGGGCTGGAGAGAAGAATGTGCTCATC 774 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 ||||| || || || || ||| |||| || | ||| | ||||| ||||| | ||| Sbjct 775 TTTGACTTGGGAGGGGGCACTTTTGATGTGTCCATCCTTACCATTGAGGATGGCATCTTT 834 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || ||| | || |||||| || ||||| || || || || |||| || Sbjct 835 GAGGTGAAGTCGACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAA 887 Score = 91.5 bits (100), Expect = 6e-13 Identities = 114/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 451982 AAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTA 452041 |||||| | || |||||||| |||||||| ||||| ||||| || ||||||||||| || Sbjct 1264 AAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGCGCTGCTGTGCAAGCAGCTATCCTC 1323 Query 452042 ACAGGTTCAGATGA---TGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTA 452098 | || ||| | ||| || || ||| | ||| | | |||||||| ||||| Sbjct 1324 ATGGG---AGACAAGTCTGAGAATGTACAGGATCTGCTGCTGCTGGATGTAACCCCTCTG 1380 Query 452099 TCTCTTGGAGTTGAAACAGCTGGTGGAATGATGAC 452133 || || || | || |||||||||||| ||||||| Sbjct 1381 TCCCTGGGTATCGAGACAGCTGGTGGAGTGATGAC 1415 >seq38614 Length=6869 Score = 93.3 bits (102), Expect = 2e-13 Identities = 85/107 (79%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCT 451246 |||| |||||| |||||||||| || | ||||| | || ||||| ||||||||| Sbjct 590 AAAGCCAAGCCCCATATTCAAGTTGATGTTGGAGGTGGACAGACAAAAACATTTGCTCCT 649 Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 ||||||||||| ||||||| || || || ||||||||||| ||||| Sbjct 650 GAAGAAATTTCTGCTATGGTCCTGACAAAGATGAAAGAAACTGCAGA 696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974207337844844