Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq50963 196 6e-45 seq38614 84.2 3e-11 >seq50963 Length=3962 Score = 196 bits (216), Expect = 6e-45 Identities = 371/543 (68%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || ||||| || || || || | || ||||| ||||| || || || Sbjct 1727 GCACCGTAAGCCACAGCCTCGTCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 1668 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || || ||||| || ||||| || || || ||||| |||| ||||| Sbjct 1667 AAGTCCTGCAGCAGTTTCTGAATCTTTGGGATACGCGTAGACCCACCAACCAGCACGATG 1608 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | |||||| |||| ||| | || || || | || || || || |||| Sbjct 1607 TCATGGATCTGCGATTTGTCGAGCTTGGCATCCCGCAGGGCCTTCTCCACGGGATCCAGC 1548 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| ||| ||| || ||||| || || | ||||||||| || ||| Sbjct 1547 GTGCCACGGAACAGGTCGGCGTTCAGCTCTTCAAAGCGAGCTCTGGTAATGGACGTGTAG 1488 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| || || || | |||||||||||||| | | || | | || || | Sbjct 1487 AAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTAGAGGACAGA 1428 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| ||||| ||||| || || | || |||| ||| | | ||| || Sbjct 1427 GTGCGCTTTGCACGCTCGCACGCGGTGCGGAGGCGGCGAACGGCTCTCTTGTTCTCGCTG 1368 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAA 7456 || |||||||| || || || || ||||| | ||||| || || | | | | Sbjct 1367 ATGTCTTTCTTGTGCTTGCGCTTGAACTCAGCGATGAAGTGGTTGACCATGCGGTT---G 1311 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| |||||||| |||||||| || || || ||||| | || || |||||||| || Sbjct 1310 TCGAAGTCTTCACCGCCCAAGTGAGTGTCACCTGCGGTGGACTTCACCTCAAAGATGCCA 1251 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||| || | | | ||| |||||||| || || || || |||||||| || || || Sbjct 1250 TCTTCGATAGTGAGAATCGACACATCAAAGGTGCCGCCTCCAAGGTCAAAGATAAGAACA 1191 Query 7577 TTC 7579 ||| Sbjct 1190 TTC 1188 >seq38614 Length=6869 Score = 84.2 bits (92), Expect = 3e-11 Identities = 128/181 (71%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT---TGGTTC 7993 ||||| || ||||| ||||| || || ||||| | ||||| || ||| |||||| Sbjct 226 CCGATGAGCCGCTTGGCATCGAACACAGTGTTCTCAGGGTT---GGATGTAAGCTGGTTC 170 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053 || || ||||||||||| | || || | ||| ||||| ||||| || || || Sbjct 169 TTGGCAGCGTCCCCGATCAAGCGCTCTCCCTCGGGCGTGAACGCCACGTAGGACGGCGTG 110 Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACG 8113 | || ||||| |||||||| || || ||||| |||||| | || | | ||||| ||| Sbjct 109 ATGCGGTTCCCCTGGTCGTTGGCGATGATTTCCACGCGGCCATTCTTGAAAACGCCCACG 50 Query 8114 C 8114 | Sbjct 49 C 49 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634658887722120