Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02]
59,693 sequences; 1,086,566,339 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq33719 140 7e-28
seq1477 122 2e-22
>seq33719
Length=2143
Score = 140 bits (154), Expect = 7e-28
Identities = 160/214 (75%), Gaps = 6/214 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || || |||||||| || || || ||||| |||| || || | |||||||||
Sbjct 377 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 318
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || | || || || || ||||||||||| ||||| ||
Sbjct 317 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 258
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||||||||| ||||||||||| ||| || || || ||||| | |||
Sbjct 257 ATCTTGGCCTTGACGTTTTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTC 201
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
|| ||||||| || || ||||| | |||||||
Sbjct 200 TTGCCTGTCAGGGTCTTCACGAAGATCTGCATTT 167
Score = 127 bits (140), Expect = 5e-24
Identities = 164/225 (73%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| || | || ||||| || || | ||| ||||| || || ||||| |||| || ||
Sbjct 618 TCTCAGGCGCAGCACAAGATGGAGGGGGGATTCTTTCTGGATGTTGTAGTCGGACAGGGT 559
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| ||||||||| |||||||| || || ||||| || | || || || || ||||||||
Sbjct 558 GCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCC 499
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095
||| ||||| || || || ||||||||| ||||||||||| ||| || || ||
Sbjct 498 TTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTC---ACTGGGCTCAACCTC 442
Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| | ||||| ||||||| || || || || | |||||
Sbjct 441 GAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 397
Score = 127 bits (140), Expect = 5e-24
Identities = 156/212 (74%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || || |||||||| || || || ||||| |||| || || | |||||||||
Sbjct 833 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 774
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || | || || || || ||||||||||| ||||| ||
Sbjct 773 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 714
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || |||||||||||||| ||| || || ||||| || | |||
Sbjct 713 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGAGTGATGGTC 657
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||||| || || || || | |||||
Sbjct 656 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 625
>seq1477
Length=51144
Score = 122 bits (134), Expect = 2e-22
Identities = 155/212 (73%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || || |||||||| || || || ||||| || | || || | |||||||||
Sbjct 50679 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 50738
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || | || || || || ||||||||||| ||||| ||
Sbjct 50739 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 50798
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || |||||||||||||| ||| || || ||||| || | |||
Sbjct 50799 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGAGTGATGGTC 50855
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||||| || || || || | |||||
Sbjct 50856 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 50887
Score = 118 bits (130), Expect = 2e-21
Identities = 154/212 (73%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || || ||||| || || || || ||||| || | || || | ||||||||
Sbjct 49886 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 49945
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || | || || || || ||||||||||| ||||| ||
Sbjct 49946 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 50005
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || |||||||||||||| ||| || || |||||||| | |||
Sbjct 50006 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTC 50062
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||||| || || || || | |||||
Sbjct 50063 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 50094
Score = 107 bits (118), Expect = 4e-18
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || || ||||| || || || || ||||| || | || || | ||||||||
Sbjct 50114 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 50173
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || | || || || |||||||||||||| ||||| ||
Sbjct 50174 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGG 50233
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080
|| || ||| || ||||||||||||||
Sbjct 50234 ATCTTGGCCTTCACATTCTCAATGGTGTC 50262
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1108633050096531
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |