Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq33719 140 7e-28 seq1477 122 2e-22 >seq33719 Length=2143 Score = 140 bits (154), Expect = 7e-28 Identities = 160/214 (75%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || ||||| |||| || || | ||||||||| Sbjct 377 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 318 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 317 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 258 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||||||||| ||||||||||| ||| || || || ||||| | ||| Sbjct 257 ATCTTGGCCTTGACGTTTTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTC 201 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || ||||||| || || ||||| | ||||||| Sbjct 200 TTGCCTGTCAGGGTCTTCACGAAGATCTGCATTT 167 Score = 127 bits (140), Expect = 5e-24 Identities = 164/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||| || || | ||| ||||| || || ||||| |||| || || Sbjct 618 TCTCAGGCGCAGCACAAGATGGAGGGGGGATTCTTTCTGGATGTTGTAGTCGGACAGGGT 559 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| || || ||||| || | || || || || |||||||| Sbjct 558 GCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCC 499 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| ||||| || || || ||||||||| ||||||||||| ||| || || || Sbjct 498 TTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTC---ACTGGGCTCAACCTC 442 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| ||||||| || || || || | ||||| Sbjct 441 GAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 397 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || ||||| |||| || || | ||||||||| Sbjct 833 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 774 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 773 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 714 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| || || ||||| || | ||| Sbjct 713 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGAGTGATGGTC 657 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||| || || || || | ||||| Sbjct 656 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 625 >seq1477 Length=51144 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || ||||| || | || || | ||||||||| Sbjct 50679 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 50738 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 50739 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 50798 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| || || ||||| || | ||| Sbjct 50799 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGAGTGATGGTC 50855 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||| || || || || | ||||| Sbjct 50856 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 50887 Score = 118 bits (130), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| || | || || | |||||||| Sbjct 49886 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 49945 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 49946 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 50005 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| || || |||||||| | ||| Sbjct 50006 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTC 50062 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||| || || || || | ||||| Sbjct 50063 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 50094 Score = 107 bits (118), Expect = 4e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| || | || || | |||||||| Sbjct 50114 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 50173 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || |||||||||||||| ||||| || Sbjct 50174 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGG 50233 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || ||| || |||||||||||||| Sbjct 50234 ATCTTGGCCTTCACATTCTCAATGGTGTC 50262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108633050096531