Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq47833 122 7e-22 seq50963 111 1e-18 >seq47833 Length=2628 Score = 122 bits (134), Expect = 7e-22 Identities = 360/545 (66%), Gaps = 9/545 (2%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || || || |||||||| || || ||||| | || |||| ||| Sbjct 193 GCGATCGGCATCGACTTGGGCACCACATACTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 252 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || ||||| || || || ||| | || || || ||||| | ||||| Sbjct 253 GTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCCAGCTATGTGGCCTTCACC 312 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | | |||||||| || || | || | || || |||||||| Sbjct 313 GACACAGAGCGCCTCATCGGTGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 372 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| || ||| | || || | | | | |||| | || || ||||| Sbjct 373 ACCATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGGCT 432 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || |||||||| ||||| |||| | || |||| ||| || || | | | || | Sbjct 433 GACATGAAGCACTGGCCCTTCCGTGTGGTGAATGAGGGTGGCAAGCCGAAGGT-GCAGGT 491 Query 550292 --ACT-CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTA 550348 | | || | ||| || | || | ||| ||||| | || || ||||| | Sbjct 492 GGAGTACAAGGGGGAGATGA-AGACCTTCTTC-CCAGAGGAGATCAGCTCCATGGTCCTG 549 Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGA-TGCAGTAAT 550407 | || |||||| | | || |||| | | || | ||| ||| || ||| || || Sbjct 550 ACTAAGATGAAAGAGATCGCTGAGGCTTATCTGGGGCGC-AAGGTACAGAATGCTGTCAT 608 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 || || || || || || |||||||| || || || || || ||||||||||| ||| Sbjct 609 CACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACTAT 668 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 |||| |||||||| | ||||||||||| || || || || ||||| | || ||||| Sbjct 669 CACTGGCCTTAATGTGATGCGTATTATCAACGAGCCCACAGCAGCTGCTATAGCCTATGG 728 Query 550528 ACTTG 550532 |||| Sbjct 729 -CTTG 732 >seq50963 Length=3962 Score = 111 bits (122), Expect = 1e-18 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| ||| | ||||||||||| || || |||||||| || || || || || Sbjct 943 GTTACTAATGCTGTAGTGACTGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCGACA 1002 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || || || || || ||||||||||| || || ||| Sbjct 1003 AAAGATGCTGGAACCATTGCAGGGCTCAACGTGCTGCGAATTATCAATGAGCCCACAGCT 1062 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| | || ||||| || || || Sbjct 1063 GCTGCCATAGCCTATGGCCTGGACAA 1088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026139164944570