Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq39000 114 1e-20 >seq39000 Length=16925 Score = 114 bits (126), Expect = 1e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| |||||||| || || ||||||||||| || ||||| ||||||| || Sbjct 1908 CATATCTTTGTATTCTGCTCCAAAGTGTCTCCACTGGAAACCATACACTGGTCCCAAATC 1849 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 |||||| || ||| ||| ||| ||| |||| || || | || || || || || Sbjct 1848 TCCCTCCTCTCTGGTAATGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATC 1789 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||| ||||| || ||||| | ||||||||||||| ||||| ||||| Sbjct 1788 CCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGACCC 1741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408320327248289