Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2877 91.5 3e-13 >seq2877 Length=20153 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 ||||||| || ||| |||| |||| | ||| |||||||| || |||||||| ||||||| Sbjct 9526 CCACCTCATCTTTGCTGGTGTACTCCACGATTTCTGTACACAGATTGCTGCATTTGATGG 9467 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 |||||| || | ||||| ||| || ||| || ||| ||||| ||||| | || Sbjct 9466 TCCCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTG 9407 Query 221850 CGCCAGTCTCCAGCTGAG 221867 ||| |||||| ||||| Sbjct 9406 TGCCGGTCTCCGTCTGAG 9389 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || || | || ||||||||| || || ||||| || || || || || Sbjct 7863 CTGGTTGGTTTCCACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTC 7804 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 ||||| |||||||| ||| || | || ||| | | || | ||||||||| ||||| Sbjct 7803 TCTGGCTCGCTGCTCTTCCTTCCCAGTATTCTTCTTTAAGTCAAGAAACTCAAAGATGTC 7744 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||||||||||||| |||| ||| | ||| || |||| || Sbjct 7743 CAAGTGCCACGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 7700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928151730841920