Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq33136 232 8e-56 >seq33136 Length=22229 Score = 232 bits (256), Expect = 8e-56 Identities = 602/912 (66%), Gaps = 13/912 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || || |||| ||||| || || || |||||| || ||| || | Sbjct 17335 TGTGTCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCAAACT 17394 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||||| || |||||| | ||| || | Sbjct 17395 TATTAGCAAAGAAGTGGTG---GTTTCGTAGAATCCAGTTCAGGTCTCCTGCCCCAAAAA 17451 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | ||| || || |||| || ||||| | || ||||| | || || Sbjct 17452 CACAGACAGAGCGAACGTGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTGGACATGT 17511 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| ||||| ||||| | || | |||||| || || | Sbjct 17512 CACCTTCAAAGTACTGCCACTTGACAAATCTGGCCAGTGCATTCATGTCAGAAACATCAT 17571 Query 160285 ATTTGTACATCAGG--GGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCA 160342 | ||| | | || | ||| ||||| || || | || || | ||| | || ||||| Sbjct 17572 ACTTG--CCACTGGAAGAAACTGCACCCGGGACTTCAGGGATTCTCTGGATTGTTGCCCA 17629 Query 160343 CAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCT 160402 ||||| || || |||||||| ||||| || | ||| || || |||| ||| || Sbjct 17630 CAGGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATAAACTTAAGTATTTTGCT 17689 Query 160403 GTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAA 160462 | | || | || | |||| | || ||||| || || || || || || Sbjct 17690 GCTTTCTAATACATATTCCACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAA 17749 Query 160463 TATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522 || || || | ||||||| | |||||| || ||||| | || | Sbjct 17750 AATTGGAATACTGAGAGGCGGCAGTTGTTTGTCTATGCCTGTGTTCTTTATTTTACCATC 17809 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTC 160582 | | | | || | || |||||||| || || | |||||| ||| || || Sbjct 17810 AATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACTGGCATTTTTTCTGTTTC 17869 Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642 | || || |||| | || | ||| | | || || || || |||| ||||| | Sbjct 17870 CAAGCTATTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTAT 17929 Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702 |||||||| | || || | |||||| | ||| ||||| || | || || || Sbjct 17930 AGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTATAG 17989 Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762 || ||||||| ||||| ||||||||||| | |||||| ||||| || || || |||| Sbjct 17990 ATCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATATACAACACTCTC 18049 Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAA 160822 || | |||| | |||||| ||||| ||||| || || |||||| ||| | ||| || Sbjct 18050 TAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCACAG-CAGCAA 18108 Query 160823 GAACATCTTATCC---GCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTA 160879 || | | ||| | |||| ||| || || | ||| || | |||||||| || || Sbjct 18109 AAAAAGAT--TCCGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATA 18166 Query 160880 GATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939 ||| | || || | || || | |||||| || || |||| | ||| || ||||| || Sbjct 18167 GATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGC 18226 Query 160940 TATCGGAAACTC 160951 || ||||| || Sbjct 18227 AATTGGAAATTC 18238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576788500678680