Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11666 179 5e-39 seq23291 159 4e-33 seq12764 158 1e-32 seq46569 129 7e-24 seq17359 104 3e-16 seq24783 98.7 1e-14 >seq11666 Length=1964 Score = 179 bits (198), Expect = 5e-39 Identities = 161/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 1275 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 1334 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 1335 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 1394 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 1395 TGTCGTTGACAAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 1454 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1455 GCACCTGCTTCAGCACCTTGTA 1476 >seq23291 Length=660 Score = 159 bits (176), Expect = 4e-33 Identities = 139/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 1254372 CGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGA 1254431 |||||||| ||||||||||| |||| | ||| ||| ||||||||| |||||||||| Sbjct 655 CGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGTGCGCCAGG 596 Query 1254432 CGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGAC 1254491 || ||||||| | ||||||| |||| |||||||||||||| |||||||||| | Sbjct 595 CGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACAAAGGAGTTCATGATGCCC 536 Query 1254492 ATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 || | |||| ||||||||| ||| |||||||||||||| ||||||||||| Sbjct 535 ATGGCCTTGGACGAGATGCCCGTGTCCGGGTGCACCTGCTTCAGCACCTTGTA 483 >seq12764 Length=1177 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||| | ||||||||||| |||| | || Sbjct 816 GCTTGGCCAGCTCGCCGGGCAGCACCAGCCGCACGCCCGTCTGGATCTCCCGCGAGGTGA 757 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 756 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 697 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| |||||||| |||||||||| ||| | ||| ||||| ||| ||| |||| Sbjct 696 TGTCATTGACAAAGGAGTTCATGATGCTCATGGCTTTGGATGAGATACCCGTGTCTGGGT 637 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| || |||||||| Sbjct 636 GCACCTGCTTCAGTACCTTGTA 615 >seq46569 Length=20406 Score = 129 bits (142), Expect = 7e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| || | | | ||||||||| || ||||| ||||| || | | || Sbjct 15484 GCTTGGCCAGTTCTCCCGGGAGCAGCAGGCGCACAGCTGTCTGAATCTCCCGGGAGGTGA 15425 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| ||| || ||||||| || | | Sbjct 15424 TGGTGGAGCGCTTGTTGTAATGGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAAGA 15365 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 15364 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 15305 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | || ||||| ||||||||||||| Sbjct 15304 GGACTTGCTTCAGCACCTTGTAGA 15281 >seq17359 Length=13938 Score = 104 bits (114), Expect = 3e-16 Identities = 136/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| || | | | ||||||||| || ||||| ||||| | ||| | Sbjct 13900 GCTTGGCCAGTTCTCCCGGGAGCAGCAGGCGCACAGCTGTCTGAATCTCCCTGGTG---A 13844 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||| ||| | || ||||| || ||| || | | | | || |||| | Sbjct 13843 TGGTGGAGCGCTGGTTGTACTGGGCCAGGCGCGAGGCTTCCGAGGCCAGCCGCTCGAAGA 13784 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 13783 TGTCGTTGACAAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCTGGGT 13724 Query 1254523 GCACCTGC 1254530 |||||||| Sbjct 13723 GCACCTGC 13716 >seq24783 Length=9331 Score = 98.7 bits (108), Expect = 1e-14 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 ||||||||| || ||||| | |||||||||||||| |||||||||| ||| | | || Sbjct 143 CACCTCCTCCGCTGTCCAAAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCATG 84 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 ||| |||| ||||||| ||| |||||| ||| ||||| |||| ||| || || Sbjct 83 GTACTGGATGGGGAAGACGACGAAGCGGCGGGGATTGTCCCGCAGCAGCGGCTC 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6102240512877681