Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq11666 224 2e-52 seq12764 210 3e-48 seq46569 188 1e-41 seq17359 161 2e-33 seq23291 150 3e-30 seq50540 105 1e-16 seq9101 105 1e-16 seq43400 100 4e-15 seq24783 100 4e-15 >seq11666 Length=1964 Score = 224 bits (248), Expect = 2e-52 Identities = 196/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 1236 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 1295 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 1296 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1355 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| |||||||||||||| ||||||| Sbjct 1356 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACAAAGGAGTTCA 1415 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| |||||||||||||| |||||||||| Sbjct 1416 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 1475 Query 1485710 AAAC 1485713 | || Sbjct 1476 ACAC 1479 >seq12764 Length=1177 Score = 210 bits (232), Expect = 3e-48 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 855 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 796 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||| | ||||||||||| || | | ||| ||| ||||||||| | Sbjct 795 GCACCAGCCGCACGCCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 736 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||| |||||||| ||||||| Sbjct 735 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCATTGACAAAGGAGTTCA 676 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||| ||| ||| |||||||||||||| || ||||||| Sbjct 675 TGATGCTCATGGCTTTGGATGAGATACCCGTGTCTGGGTGCACCTGCTTCAGTACCTTGT 616 Query 1485710 AAAC 1485713 | || Sbjct 615 ACAC 612 >seq46569 Length=20406 Score = 188 bits (208), Expect = 1e-41 Identities = 188/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||||||||| |||||| |||||||||| || | | Sbjct 15523 TGTACTTGGTGACGGCCTTGGTGCCCTCTGAGACAGCGTGCTTGGCCAGTTCTCCCGGGA 15464 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||| || ||||| ||||| |||| | ||| ||| ||||||||| Sbjct 15463 GCAGCAGGCGCACAGCTGTCTGAATCTCCCGGGAGGTGATGGTGGAGCGCTTGTTGTAAT 15404 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || ||||||| || | ||||| ||||| || ||||||| Sbjct 15403 GGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAAGATGTCATTGACGAAGGAGTTCA 15344 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| || ||||| |||||||||| Sbjct 15343 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACTTGCTTCAGCACCTTGT 15284 Query 1485710 AAAC 1485713 | || Sbjct 15283 AGAC 15280 >seq17359 Length=13938 Score = 161 bits (178), Expect = 2e-33 Identities = 174/227 (77%), Gaps = 5/227 (2%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| ||||| |||||| |||||||||| || | | Sbjct 13938 GTACTTGGTGACGGCCTTGGTGCCCTCGGAGACAGCGTGCTTGGCCAGTTCTCCCGGGAG 13879 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC- 1485589 | ||||||||| || ||||| ||||| | ||| ||| ||| ||||| ||| || | Sbjct 13878 CAGCAGGCGCACAGCTGTCTGAATCTCCCTGGT---GATGGTGGAGCGCTGGTT-GTACT 13823 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||||||| ||| || | | | | || |||| |||||||||||||| ||||||| Sbjct 13822 GGGCCAGGCGCGAGGCTTCCGAGGCCAGCCGCTCGAAGATGTCGTTGACAAAGGAGTTCA 13763 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 |||| ||| | ||| ||||||||| ||| |||||||||||| Sbjct 13762 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCTGGGTGCACCTGC 13716 >seq23291 Length=660 Score = 150 bits (166), Expect = 3e-30 Identities = 139/176 (79%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 1485538 CGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGG 1485597 |||||||| ||||||||||| || | | ||| ||| ||||||||| | |||||||| Sbjct 655 CGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGTGCGCCAGG 596 Query 1485598 CGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGAC 1485657 || ||||||| | ||||||| |||| |||||||||||||| ||||||||||| | Sbjct 595 CGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACAAAGGAGTTCATGATGCCC 536 Query 1485658 ATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAAC 1485713 || | ||| ||||||||| ||| |||||||||||||| ||||||||||| || Sbjct 535 ATGGCCTTGGACGAGATGCCCGTGTCCGGGTGCACCTGCTTCAGCACCTTGTACAC 480 >seq50540 Length=712 Score = 105 bits (116), Expect = 1e-16 Identities = 78/91 (86%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 617 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 676 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 | ||| |||||||| ||||||||||| || Sbjct 677 GCAGCAGCCGCACGGCCGTCTGGATCTCCCG 707 >seq9101 Length=8299 Score = 105 bits (116), Expect = 1e-16 Identities = 78/91 (86%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 1304 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 1363 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 | ||| |||||||| ||||||||||| || Sbjct 1364 GCAGCAGCCGCACGGCCGTCTGGATCTCCCG 1394 >seq43400 Length=6163 Score = 100 bits (110), Expect = 4e-15 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 5032 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 4973 Query 1485530 TGATCAGGCGCACGGCGGTCTGGAT 1485554 | ||| |||||||| |||||||| Sbjct 4972 GCAGCAGCCGCACGGCCGTCTGGAT 4948 >seq24783 Length=9331 Score = 100 bits (110), Expect = 4e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || |||||||| |||||||||||||| |||||||||| ||| || ||| Sbjct 142 ACCTCCTCCGCTGTCCAAAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCATGG 83 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || ||||| ||| || || || ||||||||||| Sbjct 82 TACTGGATGGGGAAGACGACGAAGCGGCGGGGATTGTCCCGCAGCAGCGGCTC 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7909896583330227