Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02]
59,693 sequences; 1,086,566,339 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq47833 105 5e-17
seq23784 93.3 3e-13
>seq47833
Length=2628
Score = 105 bits (116), Expect = 5e-17
Identities = 671/1064 (63%), Gaps = 29/1064 (3%)
Strand=Plus/Minus
Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491
||||| || |||||||||||||| | ||||| ||||| ||||| || ||||| || |
Sbjct 1646 ACATTCAGGATACCATTGGCATCAATGTCAAAAGTGACCTCAATCTGGGGGACTCCACGG 1587
Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551
| || |||||||| || | | ||| | || || || || || || || |
Sbjct 1586 GGTGCTGGTGGGATGCCCGTTAGGTCAAACTTGCCTAGCAAGTTGTTGTCCTTTGTCATG 1527
Query 281552 TTTCGTTCACCCTCGAAAATTTGGAT-AGTAA-CTACAGTTTGATTATCTGAATAAGTTG 281609
| ||||||||| | | |||| || | || | | || || || || || || |
Sbjct 1526 GCCCTCTCACCCTCGTACACCTGGACCAGGACGCTGC--TCTGGTTGTCCGAGTAGGTGG 1469
Query 281610 TAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATA 281668
| || |||| ||| ||| ||||| || ||||| | | || | | ||||||
Sbjct 1468 TGAAGG-TCTGTGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGCGGTCATC 1410
Query 281669 ATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT 281728
| ||||||||||| || | ||| || || ||||| || ||||| | || | | ||
Sbjct 1409 ACTCCACCAGCTGTCTCGATACCCAGGGACAGAGGGGTTACATCCAGCAGCAGCAGATCC 1350
Query 281729 TGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 281788
|| | || ||| | | || | || ||||||||||| | |||||| ||||| |||
Sbjct 1349 TGTACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCGCCATAAGCA 1290
Query 281789 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGA 281848
||||| |||||||| || | | | || || | ||| |||||||| |||| ||
Sbjct 1289 ACAGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAATCCTGCAGC 1230
Query 281849 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 281908
|| | | | ||| || ||||||| || || || || | || || || || | |||
Sbjct 1229 AGCTTTTGGATCTTGGGGATACGAGTGGAGCCACCCACCAGCACGATCTCCTGGATCTGG 1170
Query 281909 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAAC 281968
|| || || || | ||| | | || || || || || || | | | ||
Sbjct 1169 CCCTTGTCTAGCTTGGCATCACGCAGGGCCTTCTCCACCGGCTCCAGGGTACCACGGAAG 1110
Query 281969 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGACATTATAA-TCAAT 282024
| || | | || || ||||| || | ||||| || ||| || || |||||
Sbjct 1109 AGATCAGCATTGAGCTCCTCGAAGCGGGCACGAGTAATGGAGGTG----TAGAAGTCAAT 1054
Query 282025 TCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTT 282084
|| || | | || |||| ||||| ||| || || ||||| || | || ||
Sbjct 1053 GCCCTCATAGAGGGAGTCAATCTCAATGCTAGCCTGGGTGGAAGAGCTAAGAGTGCGCTT 994
Query 282085 AGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCT 282142
|| | ||||| ||||| | |||| | || || | ||| ||| | | ||
Sbjct 993 TGCCCTCTCACAAGCTGTACGCAGTCGCCTTACTGC--TCGCTTGTTGCCAGCGATGTCG 936
Query 282143 GTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAAT 282200
|| | || | |||||| ||||| |||| ||| | || | || || ||||| |
Sbjct 935 CGCTTGTGCTTACGCTTGAATTCTTC--CACAAAATGGTTCACCATGCGGTTGTCAAAGT 878
Query 282201 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 282260
| || || |||| | || | || | || | | || | || | ||||| ||||
Sbjct 877 CCTCCCCACCCAGATGGGTGTCACCAGCTGTCGACTTCACCTCAAAGATGCCATCCTCAA 818
Query 282261 GAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 282320
| | | | |||||| || || || |||| ||||| || || |||||| | |
Sbjct 817 TGGTAAGGATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACATTCTTCT 758
Query 282321 CTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 282374
|| | || || || || | ||||| || | |||||| || || || || |
Sbjct 757 CTCCAGCCCGGGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTGGGCTCGT 698
Query 282375 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 282434
| ||||| | || |||||||| |||| || | || |||||||| ||||| || | |
Sbjct 697 TGATAATACGCATCACATTAAGGCCAGTGATAGTGCCAGCATCTTTGGTGGCCTGGCGCT 638
Query 282435 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCTGT 282477
| || || || || || ||||| || || || || ||| |||||
Sbjct 637 GGGAGTCATTGAAGTAAGCAGGCACTGTGATGACAGCATTCTGT 594
>seq23784
Length=29803
Score = 93.3 bits (102), Expect = 3e-13
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235
||| || || || | ||||| || ||||| || |||||| | ||| | | | |||||
Sbjct 5868 TGTTGTGGCTACGGTGGCATTCGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 5809
Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295
||||||||| || || ||| | || ||| ||||||||||||||||| ||||| |||||
Sbjct 5808 TCATTACGGTGCCCCGAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 5749
Query 131296 TGATGG 131301
|||||
Sbjct 5748 CGATGG 5743
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3737699725962618
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |