Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq47833 105 5e-17 seq23784 93.3 3e-13 >seq47833 Length=2628 Score = 105 bits (116), Expect = 5e-17 Identities = 671/1064 (63%), Gaps = 29/1064 (3%) Strand=Plus/Minus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 ||||| || |||||||||||||| | ||||| ||||| ||||| || ||||| || | Sbjct 1646 ACATTCAGGATACCATTGGCATCAATGTCAAAAGTGACCTCAATCTGGGGGACTCCACGG 1587 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551 | || |||||||| || | | ||| | || || || || || || || | Sbjct 1586 GGTGCTGGTGGGATGCCCGTTAGGTCAAACTTGCCTAGCAAGTTGTTGTCCTTTGTCATG 1527 Query 281552 TTTCGTTCACCCTCGAAAATTTGGAT-AGTAA-CTACAGTTTGATTATCTGAATAAGTTG 281609 | ||||||||| | | |||| || | || | | || || || || || || | Sbjct 1526 GCCCTCTCACCCTCGTACACCTGGACCAGGACGCTGC--TCTGGTTGTCCGAGTAGGTGG 1469 Query 281610 TAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATA 281668 | || |||| ||| ||| ||||| || ||||| | | || | | |||||| Sbjct 1468 TGAAGG-TCTGTGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGCGGTCATC 1410 Query 281669 ATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT 281728 | ||||||||||| || | ||| || || ||||| || ||||| | || | | || Sbjct 1409 ACTCCACCAGCTGTCTCGATACCCAGGGACAGAGGGGTTACATCCAGCAGCAGCAGATCC 1350 Query 281729 TGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 281788 || | || ||| | | || | || ||||||||||| | |||||| ||||| ||| Sbjct 1349 TGTACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCGCCATAAGCA 1290 Query 281789 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGA 281848 ||||| |||||||| || | | | || || | ||| |||||||| |||| || Sbjct 1289 ACAGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAATCCTGCAGC 1230 Query 281849 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 281908 || | | | ||| || ||||||| || || || || | || || || || | ||| Sbjct 1229 AGCTTTTGGATCTTGGGGATACGAGTGGAGCCACCCACCAGCACGATCTCCTGGATCTGG 1170 Query 281909 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAAC 281968 || || || || | ||| | | || || || || || || | | | || Sbjct 1169 CCCTTGTCTAGCTTGGCATCACGCAGGGCCTTCTCCACCGGCTCCAGGGTACCACGGAAG 1110 Query 281969 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGACATTATAA-TCAAT 282024 | || | | || || ||||| || | ||||| || ||| || || ||||| Sbjct 1109 AGATCAGCATTGAGCTCCTCGAAGCGGGCACGAGTAATGGAGGTG----TAGAAGTCAAT 1054 Query 282025 TCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTT 282084 || || | | || |||| ||||| ||| || || ||||| || | || || Sbjct 1053 GCCCTCATAGAGGGAGTCAATCTCAATGCTAGCCTGGGTGGAAGAGCTAAGAGTGCGCTT 994 Query 282085 AGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCT 282142 || | ||||| ||||| | |||| | || || | ||| ||| | | || Sbjct 993 TGCCCTCTCACAAGCTGTACGCAGTCGCCTTACTGC--TCGCTTGTTGCCAGCGATGTCG 936 Query 282143 GTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAAT 282200 || | || | |||||| ||||| |||| ||| | || | || || ||||| | Sbjct 935 CGCTTGTGCTTACGCTTGAATTCTTC--CACAAAATGGTTCACCATGCGGTTGTCAAAGT 878 Query 282201 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 282260 | || || |||| | || | || | || | | || | || | ||||| |||| Sbjct 877 CCTCCCCACCCAGATGGGTGTCACCAGCTGTCGACTTCACCTCAAAGATGCCATCCTCAA 818 Query 282261 GAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 282320 | | | | |||||| || || || |||| ||||| || || |||||| | | Sbjct 817 TGGTAAGGATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACATTCTTCT 758 Query 282321 CTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 282374 || | || || || || | ||||| || | |||||| || || || || | Sbjct 757 CTCCAGCCCGGGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTGGGCTCGT 698 Query 282375 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 282434 | ||||| | || |||||||| |||| || | || |||||||| ||||| || | | Sbjct 697 TGATAATACGCATCACATTAAGGCCAGTGATAGTGCCAGCATCTTTGGTGGCCTGGCGCT 638 Query 282435 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCTGT 282477 | || || || || || ||||| || || || || ||| ||||| Sbjct 637 GGGAGTCATTGAAGTAAGCAGGCACTGTGATGACAGCATTCTGT 594 >seq23784 Length=29803 Score = 93.3 bits (102), Expect = 3e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || || | ||||| || ||||| || |||||| | ||| | | | ||||| Sbjct 5868 TGTTGTGGCTACGGTGGCATTCGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 5809 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 ||||||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 5808 TCATTACGGTGCCCCGAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 5749 Query 131296 TGATGG 131301 ||||| Sbjct 5748 CGATGG 5743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737699725962618