Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq33904 87.8 2e-12 >seq33904 Length=11846 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCA 21184 ||||| ||||| || | || || ||| ||||| | || ||| |||| | | | ||||| Sbjct 5902 AGCATATGGGGACCAACATGTGACGGCCTAGATCGTATCGTTGAGCGTTTTAATATGCCA 5843 Query 21185 GAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGC 21244 ||| | ||||| || |||||| || | |||||||||||||| || || | || |||| Sbjct 5842 GAGTTGCAAGTTGGTGACTGGATCCTGTTTGAAAACATGGGTGCCTATA-CTGTTGCAGC 5784 Query 21245 -TCTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295 |||| || || || || |||| | |||| || |||||||| || ||| Sbjct 5783 AGCTTCTACTTTCAATGGATTCCAGAGGCCAACAATACACTATGTGATGTCA 5732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463199719656240