Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq33136 123 3e-23 >seq33136 Length=22229 Score = 123 bits (136), Expect = 3e-23 Identities = 236/344 (69%), Gaps = 8/344 (2%) Strand=Plus/Plus Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 |||||||| | |||||||| |||| ||||| || || | |||||||| || || Sbjct 17919 TTGGTCTTTATAGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTT 17978 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 || ||| ||||| | | ||||| | || ||||| || | ||||| || || || Sbjct 17979 CTTCTGTATAGATCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATAT 18038 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || || ||||| ||| ||| | ||||||||| || ||||| || ||||| ||| || Sbjct 18039 ACAACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTC 18098 Query 162835 ACGGCCAGTGAGAACATCGGGTCCG----CTTTCCTATCTACGTGTACGCAGTATAGATT 162890 || || || | || | | |||| |||| | || || || | |||||| | ||| Sbjct 18099 ACAGC-AGCAAAAAAA--GATTCCGGAGACTTTT-TGTCAACATGAATGCAGTAAAAATT 18154 Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950 ||||||||| ||||| | || || | ||| || | |||||| || || || | ||||| Sbjct 18155 CTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCAC 18214 Query 162951 GATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 || || || || || || || || || || || ||||||| Sbjct 18215 TATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTGCTGAGAG 18258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578000395732800