Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq33719 105 4e-18 seq1477 98.7 7e-16 >seq33719 Length=2143 Score = 105 bits (116), Expect = 4e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33519 GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATC 33578 || |||||| |||| || | ||| | ||| || ||| ||| || || |||||||| || Sbjct 855 GTTACCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 796 Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638 ||| || ||||| | || |||| || || || ||||| |||| | ||||||||| | Sbjct 795 GGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGG 736 Query 33639 CGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATT 33697 || | ||||| ||||| || || |||| ||| ||| |||||| || | | Sbjct 735 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CATTCTCAATGGTGTCACTGGGCT 677 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || |||| ||||| || || ||||| | || || |||||||||||||| Sbjct 676 CAACCTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 625 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| || | ||| | ||| || | | ||||| || |||||||| ||||| Sbjct 623 CCACCTCTCAGGCGCAGCACAAGATGGAGGGGGGATTCTTTCTGGATGTTGTAGTCGGAC 564 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | ||||||||| | || Sbjct 563 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 504 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | | | ||| |||||| || | || || Sbjct 503 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTTTCAATGGTGTCACTGGGCTCAAC 445 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || ||||| | || || |||||||||||||| Sbjct 444 CTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 397 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||| | ||| || ||| ||| || || |||||||| ||||| Sbjct 395 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 336 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | ||||||||| | || Sbjct 335 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 276 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | | | ||| |||||| || | || || Sbjct 275 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTTTCAATGGTGTCACTGGGCTCAAC 217 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || ||||| | || || || ||||||||||| Sbjct 216 CTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 169 >seq1477 Length=51144 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||| | ||| || ||| ||| || || |||||||| || || Sbjct 50661 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 50720 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | ||||||||| | || Sbjct 50721 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 50780 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || |||| ||| ||| |||||| || | || || Sbjct 50781 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CATTCTCAATGGTGTCACTGGGCTCAAC 50839 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 |||| ||||| || || ||||| | || || |||||||||||||| |||| Sbjct 50840 CTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT-GTTG 50891 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| || | ||| | ||| || ||| || || || |||||||| || || Sbjct 49868 CCGCCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 49927 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || |||| || || || ||||| |||| | ||||||||| | || Sbjct 49928 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 49987 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || |||| ||| ||| |||||| || | || || Sbjct 49988 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CATTCTCAATGGTGTCACTGGGCTCAAC 50046 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || ||||| | || || |||||||||||||| Sbjct 50047 CTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 50094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328464865066560