Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2877 116 4e-21 seq33719 89.7 5e-13 >seq2877 Length=20153 Score = 116 bits (128), Expect = 4e-21 Identities = 93/112 (83%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| ||||||||| | ||||| ||||||||||| ||| ||||| || ||||||| Sbjct 9508 TGTACTCCACGATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGAT 9449 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 |||| ||||| ||||| | ||||||| | |||||||||||| ||||||||| Sbjct 9448 TGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCGGTCTC 9397 >seq33719 Length=2143 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| || | ||| | | | ||||| || || |||||||||||| || ||| || Sbjct 387 CAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCG 328 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| ||||| || || | | |||| || | ||| ||||| || || |||||||| Sbjct 327 CCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTC 268 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || || || | | ||| | || || | ||||| || |||| || Sbjct 267 CTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGT 208 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || ||||| || || | ||| |||||||| Sbjct 207 GATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 169 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| || |||||||||||| || ||| ||| |||||| ||||| || || | | Sbjct 590 GATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCA 531 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| || || |||||||| || || || || || | Sbjct 530 AAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACG 471 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | ||||| || |||| || | || || || ||||| || || Sbjct 470 TTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTC 411 Query 132110 ATGAAAATCTGCATG 132124 | || ||||||||| Sbjct 410 ACAAAGATCTGCATG 396 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| || | ||| | | | ||||| || || |||||||||||| || ||| || Sbjct 843 CAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCG 784 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| ||||| || || | | |||| || | ||| ||||| || || |||||||| Sbjct 783 CCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTC 724 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || || |||| | || | || || | ||||| || || | || Sbjct 723 CTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGT 664 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || || ||||| || || | || ||||||||| Sbjct 663 GATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476255570595480