Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq14013 116 1e-22 seq11191 116 1e-22 seq190 116 1e-22 seq30231 109 2e-20 seq40607 100 9e-18 seq39210 98.7 3e-17 seq25362 98.7 3e-17 seq27831 82.4 2e-12 seq46407 80.6 8e-12 seq14956 78.8 3e-11 >seq14013 Length=7794 Score = 116 bits (128), Expect = 1e-22 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 2183 GCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 2242 Query 2829 CCGGGCTTCAGC 2840 |||||||||||| Sbjct 2243 CCGGGCTTCAGC 2254 >seq11191 Length=56875 Score = 116 bits (128), Expect = 1e-22 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 50836 GCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 50895 Query 2829 CCGGGCTTCAGC 2840 |||||||||||| Sbjct 50896 CCGGGCTTCAGC 50907 >seq190 Length=123216 Score = 116 bits (128), Expect = 1e-22 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 54449 GCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 54508 Query 2829 CCGGGCTTCAGC 2840 |||||||||||| Sbjct 54509 CCGGGCTTCAGC 54520 >seq30231 Length=25807 Score = 109 bits (120), Expect = 2e-20 Identities = 73/81 (90%), Gaps = 3/81 (4%) Strand=Plus/Minus Query 2763 TTTATG---GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCT 2819 |||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 25498 TTTATGTAAGCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCT 25439 Query 2820 GGTTCAACCCCGGGCTTCAGC 2840 ||||| | |||||| |||||| Sbjct 25438 GGTTCGATCCCGGGTTTCAGC 25418 >seq40607 Length=10056 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 88 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 147 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 148 CCCGGGTTTCGGC 160 >seq39210 Length=3004 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2900 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2959 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2960 CCGGGTTTCGGC 2971 >seq25362 Length=39800 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 32751 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 32692 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 32691 CCGGGTTTCGGC 32680 >seq27831 Length=1136 Score = 82.4 bits (90), Expect = 2e-12 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGA-CTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||||||||||| ||| ||||| ||| |||||||||||||||||||||||||| Sbjct 970 GGCTGAAGTAGCTCAGCTGG-AGAGCTGGAGAACTGAAGATCTAAAGGTCCCTGGTTCAG 1028 Query 2827 CCCCGGGCTTCAGC 2840 | || |||||||| Sbjct 1029 CTCCAAGCTTCAGC 1042 >seq46407 Length=1790 Score = 80.6 bits (88), Expect = 8e-12 Identities = 64/78 (82%), Gaps = 7/78 (9%) Strand=Plus/Plus Query 2770 CTGAAGTAGCTCAGTTGG-------GAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGT 2822 |||||||||||||| ||| ||||||||| |||||||||||||||||||||||| Sbjct 656 CTGAAGTAGCTCAGCTGGAGAGCTGGAGAGCATTCCACTGAAGATCTAAAGGTCCCTGGT 715 Query 2823 TCAACCCCGGGCTTCAGC 2840 ||| | || |||||||| Sbjct 716 TCAGCTCCAAGCTTCAGC 733 >seq14956 Length=1001 Score = 78.8 bits (86), Expect = 3e-11 Identities = 65/80 (81%), Gaps = 7/80 (9%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGG-------GAGAGCATTAGACTGAAGATCTAAAGGTCCCTG 2820 |||||||||||||||| ||| ||||||||| |||||||||||||||||||| | Sbjct 894 GGCTGAAGTAGCTCAGCTGGAGAGCTGGAGAGCATTCCACTGAAGATCTAAAGGTCCCCG 835 Query 2821 GTTCAACCCCGGGCTTCAGC 2840 ||||| | || |||||||| Sbjct 834 GTTCAGCTCCAAGCTTCAGC 815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15839251919985