Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq11666 197 2e-44 seq12764 179 5e-39 seq46569 143 4e-28 seq23291 143 4e-28 seq17359 125 1e-22 seq24783 98.7 1e-14 seq50540 91.5 2e-12 seq9101 91.5 2e-12 >seq11666 Length=1964 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || |||| ||||| Sbjct 1476 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCATG 1423 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| |||||||||||||| |||| ||||||| | ||||||| ||| Sbjct 1422 GGCATCATGAACTCCTTTGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 1363 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 1362 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 1303 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 1302 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1254 >seq12764 Length=1177 Score = 179 bits (198), Expect = 5e-39 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||| || |||||||||||||| || || || || ||||| || ||||| Sbjct 615 TACAAGGTACTGAAGCAGGTGCACCCA-GACACG--GGTATCTCATCCAA--AG-CCATG 668 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| |||||||| ||||| |||| ||||||| | ||||||| ||| Sbjct 669 AGCATCATGAACTCCTTTGTCAATGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 728 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| | |||||| Sbjct 729 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGGCGTGCGG 788 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 789 CTGGTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 837 >seq46569 Length=20406 Score = 143 bits (158), Expect = 4e-28 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| ||||| || |||||| |||| |||| ||| |||| ||| Sbjct 15281 TCTACAAGGTGCTGAAGCAAGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 15334 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||| ||||| | || ||||||| || ||| | Sbjct 15335 TGGGCATCATGAACTCCTTCGTCAATGACATCTTTGAGCGCATCGCTGGAGAAGCCTCCC 15394 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | | |||||||||| ||| ||| | | || ||||| ||||| || |||| Sbjct 15395 GCCTGGCCCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATTCAGACAGCTGTGC 15454 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | | | || |||||||||| |||||| ||||| |||||||||| Sbjct 15455 GCCTGCTGCTCCCGGGAGAACTGGCCAAGCACGCTGTCTCAGAGGGCACCA 15505 >seq23291 Length=660 Score = 143 bits (158), Expect = 4e-28 Identities = 140/179 (78%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || |||| ||||| Sbjct 483 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCATG 536 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| |||||||||||||| |||| ||||||| | ||||||| ||| Sbjct 537 GGCATCATGAACTCCTTTGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 596 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCG 725092 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 597 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCG 655 >seq17359 Length=13938 Score = 125 bits (138), Expect = 1e-22 Identities = 158/215 (73%), Gaps = 9/215 (4%) Strand=Plus/Plus Query 724928 GCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTC 724987 |||||||||||| |||| |||| ||| |||| ||||| ||||||||||| Sbjct 13716 GCAGGTGCACCCAGACACCGG-----CATC-TCCTCCAAGGCCATGAGCATCATGAACTC 13769 Query 724988 GTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAA 725047 |||||||||||||| |||| || | | | | || ||| |||||||| | | ||| Sbjct 13770 CTTTGTCAACGACATCTTCGAGCGGCTGGCCTCGGAAGCCTCGCGCCTGGCCCAGTACAA 13829 Query 725048 CAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGG 725107 | ||||| ||| ||| || | ||||| ||||| || ||||||||| | | | || Sbjct 13830 CCAGCGCTCCACCATCACCAGG---GAGATTCAGACAGCTGTGCGCCTGCTGCTCCCGGG 13886 Query 725108 CGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||||||| |||||| |||||||||||||||| Sbjct 13887 AGAACTGGCCAAGCACGCTGTCTCCGAGGGCACCA 13921 >seq24783 Length=9331 Score = 98.7 bits (108), Expect = 1e-14 Identities = 91/114 (80%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||||| || || || |||||| ||| | |||||||||| ||||| Sbjct 30 GAGCCGCTGCTGCGGGACAATCCCCGCCGCTTCGTCGTCTTCCCCATCCAGTACCATGAC 89 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | ||||| ||| |||||||||||||| |||||||| || |||||||| Sbjct 90 ATCTGGCAGATGTA-CAAGAAGGCCGAGGCCTCTTTTTGGACAGCGGAGGAGGT 142 >seq50540 Length=712 Score = 91.5 bits (100), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 725068 CGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCG 725127 |||| ||||||||||| |||||||| ||| | ||| |||||| ||||||| |||||||| Sbjct 709 CGCGGGAGATCCAGACGGCCGTGCGGCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCG 650 Query 725128 TCTCCGAGGGCACCA 725142 | ||||||||||||| Sbjct 649 TGTCCGAGGGCACCA 635 >seq9101 Length=8299 Score = 91.5 bits (100), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 725068 CGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCG 725127 |||| ||||||||||| |||||||| ||| | ||| |||||| ||||||| |||||||| Sbjct 1396 CGCGGGAGATCCAGACGGCCGTGCGGCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCG 1337 Query 725128 TCTCCGAGGGCACCA 725142 | ||||||||||||| Sbjct 1336 TGTCCGAGGGCACCA 1322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7172053700434266