Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq42166 87.8 2e-12 >seq42166 Length=22133 Score = 87.8 bits (96), Expect = 2e-12 Identities = 223/331 (67%), Gaps = 20/331 (6%) Strand=Plus/Plus Query 13734 GAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCAC 13793 |||| || ||||| ||| | ||||| | ||| || || || |||||||| |||| Sbjct 2220 GAGACCTTTGAGCGGCTCTTCAGGGCAGTGTACATGCCCCAAAATGTCTACTGCATCCAT 2279 Query 13794 GTGGACTCCAAGTCCGGCGACGAGTTCATCCGG--GGC---GTCTCGGCCATCGCCAGGT 13848 |||||| ||||| | |||| || || || ||| | |||| | | || | Sbjct 2280 GTGGACGCCAAGGCAC-CGACCCCTT--TCTGGCAGGCTGTGCAGCGGC--TGGTGAGCT 2334 Query 13849 GCTTCCCTAACGTGGCCCTGGCCCACCGG-CTGCACGACGTGGTGTACGGCTCCTGGAGT 13907 |||||||||| || | | ||| || | | | ||| ||||| || || ||| || Sbjct 2335 GCTTCCCTAATGTCTTCTTTGCCTCCCAGACAGAGCGA-GTGGTCTATGG----TGGTGT 2389 Query 13908 C----GCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTG 13963 | || ||| ||| |||||| ||||||| |||||| ||||| || | || Sbjct 2390 CTCCCGCCTGCGGGCAGACCTCCACTGCATGAGAGACCTGCTGGCCTCGGCCATGCCCTG 2449 Query 13964 GAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGT 14023 | | |||||||||||| || || ||| ||||| | |||||||||| ||||||||| Sbjct 2450 GCGCTACCTGCTCAACACCTGTGGCCAGGAGTTCCCCTTGAAGACCAACCGGGAGATCGT 2509 Query 14024 GCGGGCGCTGAAGGCCCTGGGCGGCAAGAAC 14054 | | |||||||| ||| || || |||||| Sbjct 2510 CCAGCTGCTGAAGGGCCTTGGGGGGAAGAAC 2540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658247673511680