Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq39000 102 7e-17 >seq39000 Length=16925 Score = 102 bits (112), Expect = 7e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 34288 GGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGG 34347 |||| | || || |||| |||||||| | ||| |||||||| ||||| ||| | || Sbjct 1740 GGGGTCTACAAATGCCAAAGAGCTCTCTGCAAAGGGTGTGAAGATTTGGGATGCTAATGG 1799 Query 34348 GTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCC 34407 || || || || ||||| |||| ||| ||| | | |||||||| || ||||| || Sbjct 1800 ATCACGTGAGTTCCTGGATAAGCAGGGTTTCATTACCAGAGAGGAGGGAGATTTGGGACC 1859 Query 34408 GGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || || || |||||||||||||||||||| || || || Sbjct 1860 AGTGTATGGTTTCCAGTGGAGACACTTTGGAGCAGAATA 1898 Score = 102 bits (112), Expect = 7e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||||||||||||||| || || || || ||||| || |||||||| Sbjct 1898 TATTCTGCTCCAAAGTGTCTCCACTGGAAACCATACACTGGTCCCAAATCTCCCTCCTCT 1839 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| ||| |||| ||||| || || || || || | ||| ||||| |||||| Sbjct 1838 CTGGTAATGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTC 1779 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCC 7057 || ||| | |||||||| |||| || || | |||| Sbjct 1778 ACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGACCCC 1740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447927923406960