Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq33719 141 2e-28 seq1477 132 1e-25 >seq33719 Length=2143 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| ||||| ||||| || || |||| ||||| |||| || || | |||||| Sbjct 381 CAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 322 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || || || ||||| ||||||||||| Sbjct 321 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 262 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || ||| |||||||| || || || || | ||||| || Sbjct 261 CTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 202 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || || | ||| | |||||||| Sbjct 201 CTTGCCTGTCAGGGTCTTCACGAAGATCTGCATTTT 166 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| ||||| | ||||||||| |||| ||||| |||| || || | |||||| Sbjct 609 CAGCACAAGATGGAGGGGGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 550 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || || || ||||| ||||||||||| Sbjct 549 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 490 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || ||| |||||||| || || || || | ||||| || Sbjct 489 CTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 430 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 429 CTTGCCTGTCA 419 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| ||||| ||||| || || |||| ||||| |||| || || | |||||| Sbjct 837 CAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 778 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || || || ||||| ||||||||||| Sbjct 777 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 718 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || |||||||| || || || || | ||||| || Sbjct 717 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGT 658 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 657 CTTGCCTGTCA 647 >seq1477 Length=51144 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| ||||| |||||||| || |||| ||||| || | || || | ||||| Sbjct 49882 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATC 49941 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || || || ||||| ||||||||||| Sbjct 49942 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 50001 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || |||||||| || || || || | ||||| || Sbjct 50002 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 50061 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 50062 CTTGCCTGTCA 50072 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| ||||| ||||| || || |||| ||||| || | || || | |||||| Sbjct 50675 CAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 50734 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || || || ||||| ||||||||||| Sbjct 50735 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 50794 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || |||||||| || || || || | ||||| || Sbjct 50795 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGT 50854 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 50855 CTTGCCTGTCA 50865 Score = 123 bits (136), Expect = 6e-23 Identities = 119/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| ||||| |||||||| || |||| ||||| || | || || | ||||| Sbjct 50110 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATC 50169 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || ||||| ||||| ||||||||||| Sbjct 50170 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 50229 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||||| ||||||| || |||||||| Sbjct 50230 CTGGATCTTGGCCTTCACATTCTCAATGGTGTC 50262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191619132386942