Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq39000 109 4e-19 >seq39000 Length=16925 Score = 109 bits (120), Expect = 4e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| |||||||| || || ||||| ||||| || ||||| ||||||| || Sbjct 1908 CATATCTTTGTATTCTGCTCCAAAGTGTCTCCACTGGAAACCATACACTGGTCCCAAATC 1849 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 |||||| || ||| ||| ||| ||| |||| || || | || || || || || Sbjct 1848 TCCCTCCTCTCTGGTAATGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATC 1789 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||| ||||| || ||||| | ||||||||||||| ||||| ||||| Sbjct 1788 CCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGACCC 1741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369238380394283