Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq13104 107 3e-18 seq24783 104 3e-17 seq2877 84.2 3e-11 >seq13104 Length=28606 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || || || || || |||||||| || || | ||| || Sbjct 18668 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 18727 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || || || || |||||||| |||||||| || || || || || Sbjct 18728 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 18787 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 18788 ACCACTCTCTCACC 18801 >seq24783 Length=9331 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | || |||||||| ||||| |||||||||| ||| | ||| || Sbjct 3473 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCTTCTTC 3414 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || | || ||||| ||||||||||| || ||||| || || || || || Sbjct 3413 AGCCAAAAAATCGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAGCT 3354 Query 46774 AC 46775 || Sbjct 3353 AC 3352 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || || || || | |||||| |||||||||||||| || ||||| || || Sbjct 956 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 897 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 ||||| || || || ||||| | ||||| || || ||||| ||| Sbjct 896 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTCT 851 >seq2877 Length=20153 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 75934 TCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTC 75993 ||| ||||| || || || | ||| || ||||| | || | ||| ||||| || || Sbjct 11422 TCCTTTGCTGACAGGAGACCCCTCATACGTCTCGTACGGTCCTTGCTTCTCAGCGAGCTC 11363 Query 75994 GCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTT 76052 || || ||||| || |||||||||||||| || || ||||||| || || ||| | | Sbjct 11362 ACAGCTGGCCTCCAAAGCACCGTAATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGC-T 11304 Query 76053 GCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAA 76112 | || || | || || || || || | | || || || |||||||| || ||||| | Sbjct 11303 GGGCCTCGGGGCTTTCGAAGGGGTACCGCATCAGGATGAAAGCATCTGCCAGGCCCTGCA 11244 Query 76113 CTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGC 76155 | || || || || || | ||| | | ||||| |||||| Sbjct 11243 CACCGATGCCGATGGGACGATGGCGTCTGTTGGAGCGTTCAGC 11201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712402435085760