Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq33719 149 1e-30 seq1477 145 2e-29 seq21261 89.7 1e-12 seq19648 89.7 1e-12 seq17851 89.7 1e-12 >seq33719 Length=2143 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || || ||||| | ||| || || |||||||||||||| | Sbjct 395 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 336 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || || || || || |||||||||| | || || ||| ||| Sbjct 335 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 276 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| |||||||| || || ||| | || || ||||| | || || Sbjct 275 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCAACC 216 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| ||||| || |||| ||||| ||||| ||||||||||| Sbjct 215 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATTTT 166 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || || ||||| | | | |||||| |||||||||||||| | Sbjct 623 CCACCTCTCAGGCGCAGCACAAGATGGAGGGGGGATTCTTTCTGGATGTTGTAGTCGGAC 564 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || || || || || |||||||||| | || || ||| ||| Sbjct 563 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 504 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| |||||||| || || ||| | || || ||||| | || || Sbjct 503 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCAACC 444 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || |||| ||||| || || |||||||| Sbjct 443 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 397 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | |||||| || || ||||| | ||| || || |||||||||||||| | Sbjct 852 ACCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 793 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| ||||| || || || || || |||||||||| | || || ||| || Sbjct 792 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 733 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| |||||||| || || || | || || ||||| | || || Sbjct 732 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 673 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || |||| ||||| || || |||||||| Sbjct 672 CTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 625 >seq1477 Length=51144 Score = 145 bits (160), Expect = 2e-29 Identities = 176/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || || ||||| | ||| || || |||||||||||||||| Sbjct 50661 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 50720 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || || || || || |||||||||| | || || ||| ||| Sbjct 50721 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 50780 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| |||||||| || || || | || || ||||| | || || Sbjct 50781 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 50840 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATACAAA 283112 || |||||||| ||||| || |||| ||||| || || |||||||| || | |||||| Sbjct 50841 TCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATGTTGAACTACAAA 50900 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || | |||||| || || ||||| | ||| ||| || |||||||||||||||| Sbjct 49868 CCGCCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 49927 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || || || || || |||||||||| | || || ||| ||| Sbjct 49928 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 49987 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| |||||||| || || || | || || ||||| | || || Sbjct 49988 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 50047 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || |||| ||||| || || |||||||| Sbjct 50048 TCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 50094 Score = 107 bits (118), Expect = 4e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || || ||||| | ||| ||| || |||||||||||||||| Sbjct 50096 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 50155 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || || || || || |||||||||| | || || || ||| Sbjct 50156 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 50215 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC 283039 || || |||||||| |||||||| || || || | || || ||||| Sbjct 50216 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC 50262 >seq21261 Length=27262 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 5006 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 4948 >seq19648 Length=6050 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 5878 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 5820 >seq17851 Length=10662 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 357 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045938636523222