Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq11043 167 3e-36 seq13762 123 4e-23 >seq11043 Length=29147 Score = 167 bits (184), Expect = 3e-36 Identities = 182/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||| || |||||||| ||||| ||| ||| || ||||| || |||||||| Sbjct 3384 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGG 3325 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||||| ||||| || || ||||||||||| | || || Sbjct 3324 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATCGTAGCGTACATCATTAAGCCTGGG 3265 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || || |||| | ||| || ||| || || | ||||| Sbjct 3264 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAGGTGTTCAGGGACGTGAGGAGGG 3205 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || |||| || ||||||||||| || ||||||||| Sbjct 3204 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCATCAATCATC 3145 Query 9484 TG 9485 || Sbjct 3144 TG 3143 Score = 143 bits (158), Expect = 4e-29 Identities = 219/311 (70%), Gaps = 1/311 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || |||||| | || | || ||| | | || Sbjct 5395 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAAATGAGCTTCTGTAAGGAGGCAG 5336 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || || || | ||| || |||||||| |||||||||||| | |||| Sbjct 5335 TATTGATTATTTCAAAGCCTACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 5276 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || |||| || ||||| || |||||||| || || | ||| | || Sbjct 5275 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 5216 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | ||||| |||||||| || || |||||||| || | | || | ||||||||||| Sbjct 5215 TTTCACCAAAGATGGCACCTGGTCGCGGCTTTTCTACGAGAAGGCCTGGGTACAGCTCCA 5156 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587 ||| || | |||||| ||||| | ||||| || || || || ||||||||||| Sbjct 5155 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 5096 Query 8588 TTATTAATAAA 8598 ||||| || || Sbjct 5095 TTATTGATGAA 5085 >seq13762 Length=3515 Score = 123 bits (136), Expect = 4e-23 Identities = 179/253 (71%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||||| || ||| || | |||||||| || |||||||| ||||| ||||| Sbjct 2926 TCACCGATAAGGACGAGCCGGGCTGTCTGGAAGAGCTGCTCGTCGCTCCAGGTGGGATGC 2985 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||||| | ||||| || | |||||| || | ||||||| ||||||||||| Sbjct 2986 TCCCGTTTCAGTATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 3045 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||| || | ||| || || |||| || || | ||||| || | | | ||| Sbjct 3046 CAGAGCCCCGGCAGCAGCCCGAACACCTCCTGCCCCATCGCCAGCTGCTTCTCCTTGGGG 3105 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || || || || |||| |||||| ||| | |||| |||| | ||| || |||| || Sbjct 3106 ACATCAGGCGGGTAGACCATGTGGACCGGAGCGTCGATGACAGTGGGAGGGTACACCTCT 3165 Query 9472 CCGTCAATCATCT 9484 || || | || || Sbjct 3166 CCATCCACCACCT 3178 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||| |||||| | || || |||||||||| || ||||| ||||||||| | |||| Sbjct 622 TCTTAACGATCTCAAAGCCAGTTGCTCCGCCGAATGTACTGGGTTTCCAGTACTCTGGGG 681 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| ||| | | || || || ||||| ||||| || || | ||| | |||| Sbjct 682 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAACGGCGCTCCGATCTCCACCATGC 741 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || || ||| | ||||| |||| || || | || || || | || | ||||| Sbjct 742 TTTCTCCAAAAATGCCATTGGGCTGGGGTTTCTCAAGCAGCAAGCCCGGATAAAACTCCA 801 Query 8529 CAGCCTCGACGTCTCCGTAAAG 8550 ||| |||| |||||| || || Sbjct 802 GAGCGTCGATGTCTCCATACAG 823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716341893414720