Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq33719 141 2e-28 >seq33719 Length=2143 Score = 141 bits (156), Expect = 2e-28 Identities = 163/217 (75%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || |||||||| || || ||||| || || |||||||||||||| | Sbjct 166 AAAATGC---AGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTG-- 220 Query 177975 AGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 ||| || |||||||| || |||||||| ||||| |||||||| ||||| || || | Sbjct 221 AGCCCAGTGACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCC 280 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | || ||||| | || ||||| || || || ||||| |||||||| | || || ||| Sbjct 281 CTGATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCG 340 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||| |||| || || || || || |||||||| Sbjct 341 ACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGT 377 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || ||||| || || |||||||||||||| | ||| || | Sbjct 400 CAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 457 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || |||||||| ||||| |||||||| ||||| || || || || |||| Sbjct 458 ACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGC 517 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 518 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 577 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| |||||||| | || |||||||| || | || ||| Sbjct 578 TCCAGAAAGAATCCCCCCTCCATCTTGTGCTGCGCCTGAGA 618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202810566441442