Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciconia_20boyciana_20[genbank_20GCA_5F002002965.1_202017-02-09] 505,419 sequences; 1,364,945,554 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq87587 127 1e-24 seq121029 98.7 7e-16 >seq87587 Length=7602 Score = 127 bits (140), Expect = 1e-24 Identities = 94/110 (85%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || ||| ||||||| || | |||||||||| |||||||||| || ||||||||||| Sbjct 4164 CTTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGG 4223 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| || ||||||||||| ||||| | |||||||||| ||| Sbjct 4224 AATGGAGAACCAGGTTTTTTTACCCATTATCACGACATTCTGTTTACCTG 4273 >seq121029 Length=35959 Score = 98.7 bits (108), Expect = 7e-16 Identities = 136/184 (74%), Gaps = 5/184 (3%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| || |||||||||||||| ||||| || ||||| | ||| || | Sbjct 20983 CTTTGTATTCTGCTCCAAAGTGCCTCCACTGAAAACCATAAACTGGTCCCAAATCCCCCT 20924 Query 102093 CATCTCT-GTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAA 102151 | ||||| ||| | ||||| | ||||| | || | || ||||| ||||||||| Sbjct 20923 CCTCTCTGGTCCT-GAAACCCTGCTTATCCAGGAACTCACGTGACCCATTAGCATCCCAA 20865 Query 102152 ATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACA-A 102210 || | ||| || ||| || ||||||||| | ||||| || || | ||| |||| | Sbjct 20864 ATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-AAAAAACACAGA 20807 Query 102211 CAGT 102214 |||| Sbjct 20806 CAGT 20803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359025967003169