Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciconia_20boyciana_20[genbank_20GCA_5F002002965.1_202017-02-09] 505,419 sequences; 1,364,945,554 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq109713 113 5e-20 seq50110 102 1e-16 seq191736 91.5 2e-13 >seq109713 Length=16520 Score = 113 bits (124), Expect = 5e-20 Identities = 99/122 (81%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||||| || | |||||| ||||| |||||||| ||||||| || | || | Sbjct 3688 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3629 Query 24217 TAAGCCAAAATA-TGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 24275 | |||||||| | | || ||||| || ||||||||||| |||||||| ||||| |||||| Sbjct 3628 TCAGCCAAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAG 3569 Query 24276 GC 24277 || Sbjct 3568 GC 3567 >seq50110 Length=15533 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | || ||||| || || || || ||||| ||||| | ||| | Sbjct 3963 CCTCATCTCTGCTAATAAGCTCATTGGAGAAAGTCAGCCCAGGCATCAGGCCTCTCTTCT 4022 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 4023 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAAG 4082 Query 24277 CAATAAGTCTTTCTCC 24292 ||| | ||| || || Sbjct 4083 CAACCACTCTCTCACC 4098 >seq191736 Length=12127 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 ||||| ||||| ||||||||||||||||| || || | || || ||||||| || || Sbjct 3302 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 3361 Query 54089 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 || || ||||| || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 3362 TCTTCTTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 3420 Query 54148 TTCCAAGTATATGGTCATAACTCCAGG 54174 |||| ||| |||| | | | ||||| Sbjct 3421 CTCCAGGTAGATGGCAAAAGCCCCAGG 3447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589970622783120