Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciconia_20boyciana_20[genbank_20GCA_5F002002965.1_202017-02-09] 505,419 sequences; 1,364,945,554 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq90778 150 2e-31 seq16793 147 2e-30 >seq90778 Length=611 Score = 150 bits (166), Expect = 2e-31 Identities = 377/586 (64%), Gaps = 105/586 (18%) Strand=Plus/Minus Query 139594 GGCGCGGGGCCGCGCGCCGCATCTCCCGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTT 139653 ||||||||| ||||| || | ||||||| |||||||||||||||||||| ||| ||||| Sbjct 606 GGCGCGGGGGCGCGCCCCTCCGCTCCCGGCCGCCGCCGAGGCTGACAGAGACGAGCTCTT 547 Query 139654 CGCGGCGGCAATGGCGGGTGCCGGCCGACCGCGGCCTGCGGGCG---------------- 139697 |||||||||| ||||||| |||||||||||||||||| |||||| Sbjct 546 CGCGGCGGCAGTGGCGGGAGCCGGCCGACCGCGGCCTCCGGGCGGTGCGGCGGCGGGAGC 487 Query 139698 -----------------------------------AGGACCCCAGGGCGGATGGGGGCGA 139722 |||||||||||||| |||| || Sbjct 486 CTCCGCGGCGGGCCCCCGGCTGCGGGGGGAAGACAGGGACCCCAGGGCGGGCCGGGGTGA 427 Query 139723 GAGGACCCCTCGCTGACGtttttttttGTTTGCCGTGGAGCCCCTTTCGGTCCTTTCTCC 139782 | | ||||||||||||||||||| || | |||||||||| | || | | Sbjct 426 GGAGCCCCCTCGCTGACGTTTTTTGATG------GCGGAGCCCCTTCC---CCCCACCGC 376 Query 139783 CGCGTCCGCCCCANNNNNNNNNNNNNNNNNNNNCCCCTGGGGCGGCTCCCCTAGCCCGCT 139842 ||| || ||| |||| |||| ||||||| | ||||| Sbjct 375 CGCTCCCTCCC-----------------TCCCGCCCCCCGGGCTACTCCCCTCGTCCGCT 333 Query 139843 GAAAGTCAGCGAGT-AAACAG----CGGGCGGAGGGAGCGCGGCGACAGTACCATCAATA 139897 |||||||||||||| |||||| |||||| ||||||||||| ||| Sbjct 332 GAAAGTCAGCGAGTAAAACAGCGGACGGGCGCGGGGAGCGCGGCAGCAG----------- 284 Query 139898 CCTCCGATTAGGGTTAGACACAGCGGAGCCT-TCCACCCGCCACGTGTGCCGGGGGAACC 139956 | ||||||||||| |||| | | |||| |||||||||||| | | ||||| || Sbjct 283 ----CCATTAGGGTTAGTCACACCAGGGCCTCCCCACCCGCCACGCGACCTGGGGGCGCC 228 Query 139957 CCGCGTGGGGC-TCTTGTAGCTTCCTCCGCCTACGCCCACCGCGCGCCTATTGGCCGG-G 140014 || || ||||| |||| ||| || || | ||||| |||||| | ||||| ||| | Sbjct 227 CC-CGCGGGGCTTCTTAAAGCCTC--GCGGCCCCGCCCCCCGCGCCTCCATTGGTCGGAG 171 Query 140015 CTGTACGCTGCCGCGTAGCTATTGGCGGCGGGGAGGAGAGCGAGCAGAGAGGGGCCGGT- 140073 | || || | || | ||||| |||| | || ||| | || | ||| | || Sbjct 170 GGGCACCCTCCTCCGCCACCGTTGGCTGCGGCGGGGCGAGGGGGCGGGAAGGAGAGAGTG 111 Query 140074 GCGGGAGTTTGGAACTCCGCGGTCATTCATCTCCCGCCACGCCCCA 140119 ||||||||||||||| || || ||||| || |||| | ||| ||| Sbjct 110 GCGGGAGTTTGGAACGCCCGGGCCATTCGTCCCCCGGC-CGCACCA 66 Score = 149 bits (164), Expect = 7e-31 Identities = 380/586 (65%), Gaps = 105/586 (18%) Strand=Plus/Plus Query 1501 TGGGGCGTGGCGGGAGATGAATGACCGCGGAGTTCCAAACTCCCGC-ACCGGCCCCTCTC 1559 ||| ||| | |||| || ||||| || || ||||||||||||||| || | ||| | Sbjct 66 TGGTGCG-GCCGGGGGACGAATGGCCCGGGCGTTCCAAACTCCCGCCACTCTCTCCTTCC 124 Query 1560 TGCTCGCTCTCCTCCCCGCCGCCAATAGCTACGCGGCAGCGTACAGC-CCGGCCAATAGG 1618 || | ||| || | |||| ||||| | || | || || | | ||| ||||| | Sbjct 125 CGCCCCCTCGCCCCGCCGCAGCCAACGGTGGCGGAGGAGGGTGCCCCTCCGACCAATGGA 184 Query 1619 CGCGCGGTGGGCGTAGGCGGAGGAAGCTACAAGA-GCCCCACGCGGGGTTCCCCCGGCAC 1677 |||||| ||||| | || || ||| |||| ||||| || |||| ||||| | | Sbjct 185 GGCGCGGGGGGCGGGGCCGC--GAGGCTTTAAGAAGCCCCGCG-GGGGCGCCCCCAGGTC 241 Query 1678 ACGTGGCGGGTGGA-AGGCTCCGCTGTGTCTAACCCTAATCGGAGGTATTGATGGTACTG 1736 |||||||||||| |||| | | |||| ||||||||||| | ||| Sbjct 242 GCGTGGCGGGTGGGGAGGCCCTGGTGTGACTAACCCTAATGG---------------CTG 286 Query 1737 TCGCCGCGCTCCCTCCGCCCG----CTGTTT-ACTCGCTGACTTTCAGCGGGCTAGGGGA 1791 ||||||||||| |||||| |||||| ||||||||||||||||||| | |||||| Sbjct 287 CTGCCGCGCTCCCCGCGCCCGTCCGCTGTTTTACTCGCTGACTTTCAGCGGACGAGGGGA 346 Query 1792 GCCGCCCCAGGGGGCGCCNNNNNNNNNNNNNNNNNNNNCGGACGCGGGAGAAAGGACCGA 1851 | | ||| ||||||| ||| |||| | || | Sbjct 347 GTAG-CCCGGGGGGCG---------------GGAGGGAGGGA-GCGGCGGTGGGG---GG 386 Query 1852 AAGGGGCTCCACGGCAAACaaaaaaaaaCGTCAGCGAGGGGTCCTCTCGCCCCCATCCGC 1911 |||||||||| | || ||||||||||||||||||| | ||| |||| |||| Sbjct 387 AAGGGGCTCCGC------CATCAAAAAACGTCAGCGAGGGGGCTCCTCACCCCGGCCCGC 440 Query 1912 CCTGGGGTCC---TC------------------GCCCGC--------------------- 1929 |||||||||| || |||||| Sbjct 441 CCTGGGGTCCCTGTCTTCCCCCCGCAGCCGGGGGCCCGCCGCGGAGGCTCCCGCCGCCGC 500 Query 1930 ---------AGGCCGCGGTCGGCCGGCACCCGCCATTGCCGCCGCGAAGAGTTCGCCTCT 1980 |||||||||||||||||| ||||||| ||||||||||||||| ||| |||| Sbjct 501 ACCGCCCGGAGGCCGCGGTCGGCCGGCTCCCGCCACTGCCGCCGCGAAGAGCTCGTCTCT 560 Query 1981 GTCAGCCTCGGCGGCGCCCGGGAGATGCGGCGCGCGGCCCCGCGCC 2026 |||||||||||||||| ||||||| | || ||||| ||||||||| Sbjct 561 GTCAGCCTCGGCGGCGGCCGGGAGCGGAGGGGCGCGCCCCCGCGCC 606 >seq16793 Length=194 Score = 147 bits (162), Expect = 2e-30 Identities = 116/140 (83%), Gaps = 7/140 (5%) Strand=Plus/Plus Query 1924 GCCCGCAGGCCGCGGTCGGCCGGCACCCGCCATTGCCGCCGCGAAGAGTTCGCCTCTGTC 1983 ||||| ||| |||| |||| ||| ||||||| ||||||||||||||| ||| ||||||| Sbjct 55 GCCCGGGGGCGGCGGCCGGCGGGCGCCCGCCACTGCCGCCGCGAAGAGCTCGTCTCTGTC 114 Query 1984 AGCCTCGGCGGCGCCCGGGAGATGCGGCGCGCGGCCCCGCGC-------CCCCAGCAGAG 2036 ||||||||||||| ||||||| | || ||||| |||||||| ||||||||| | Sbjct 115 AGCCTCGGCGGCGGCCGGGAGCGGGGGGGCGCGCCCCCGCGCCGGGGGGCCCCAGCAGGG 174 Query 2037 CAACACGGGAGCGGCGCCCC 2056 ||| |||||||||||||||| Sbjct 175 CAAAACGGGAGCGGCGCCCC 194 Score = 147 bits (162), Expect = 2e-30 Identities = 116/140 (83%), Gaps = 7/140 (5%) Strand=Plus/Minus Query 139564 GGGGCGCCGCTCCCGTGTTGCTCTGCTGGGG-------GCGCGGGGCCGCGCGCCGCATC 139616 |||||||||||||||| |||| ||||||||| |||||||| ||||| || | | Sbjct 194 GGGGCGCCGCTCCCGTTTTGCCCTGCTGGGGCCCCCCGGCGCGGGGGCGCGCCCCCCCGC 135 Query 139617 TCCCGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAATGGCGGGTGCCG 139676 |||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||| ||| Sbjct 134 TCCCGGCCGCCGCCGAGGCTGACAGAGACGAGCTCTTCGCGGCGGCAGTGGCGGGCGCCC 75 Query 139677 GCCGACCGCGGCCTGCGGGC 139696 |||| |||| ||| ||||| Sbjct 74 GCCGGCCGCCGCCCCCGGGC 55 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565473572702160